View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5264_low_11 (Length: 250)
Name: NF5264_low_11
Description: NF5264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5264_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 29711583 - 29711825
Alignment:
| Q |
1 |
atgagaatgggattttgatcttgatcaacatgcataaac------aatcaatgaaaatataaaacaattacaaccagtgaccacaaatatacactaacta |
94 |
Q |
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| T |
29711583 |
atgagaatgggattttgatcttgatcaacatgcataaactcatcaaatcaatgaaaatataaaacaattacaaccagtgaccacaaatatacactaacta |
29711682 |
T |
|
| Q |
95 |
----cagtgattcacacnnnnnnn-gctgtcaacattttcaataaacatattacaaatgtttaaccaataaacacttcatattaacctacgaatgcagcc |
189 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29711683 |
tatacagtgattcacacaaaaaaaagctgtcaacattttcaataagcatattacaaatgtttaaccaataaacactccatattaacctacgaatgcagcc |
29711782 |
T |
|
| Q |
190 |
acccaagagtacatgtagatcacgaaaatggtgaaggagaata |
232 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29711783 |
acccaagagtacatgtagatcacgaaaatggtgaaggagaata |
29711825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 29688992 - 29688941
Alignment:
| Q |
118 |
gtcaacattttcaataaacatattacaaatgtttaaccaataaacacttcat |
169 |
Q |
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| T |
29688992 |
gtcaacattttcaataaacacaatacaaatgtttgaccaataaacatttcat |
29688941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 29688882 - 29688846
Alignment:
| Q |
167 |
catattaacctacgaatgcagccacccaagagtacat |
203 |
Q |
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| T |
29688882 |
catattaccctacgaatgcagccactcaagagtacat |
29688846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29697256 - 29697220
Alignment:
| Q |
1 |
atgagaatgggattttgatcttgatcaacatgcataa |
37 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||| |
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| T |
29697256 |
atgagaatgagattttgatattgatcaacatgcataa |
29697220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 48734629 - 48734682
Alignment:
| Q |
116 |
ctgtcaacattttcaataaacatattacaaatgtttaaccaataaacacttcat |
169 |
Q |
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||||||||| |||| ||||||||||||||||||||| || |||||||| ||||| |
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|
| T |
48734629 |
ctgtcaacaatttcgataaacatattacaaatgtttgactaataaacatttcat |
48734682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 48871463 - 48871410
Alignment:
| Q |
117 |
tgtcaacattttcaataaacatattacaaatgtttaaccaataaacacttcata |
170 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| ||||||||| |||||| |
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|
| T |
48871463 |
tgtcaacattttcaataaacatattataaatagctaagcaataaacagttcata |
48871410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 48876767 - 48876714
Alignment:
| Q |
117 |
tgtcaacattttcaataaacatattacaaatgtttaaccaataaacacttcata |
170 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| ||||||||| |||||| |
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|
| T |
48876767 |
tgtcaacattttcaataaacatattataaatagctaagcaataaacagttcata |
48876714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 49058043 - 49058080
Alignment:
| Q |
126 |
tttcaataaacatattacaaatgtttaaccaataaaca |
163 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
49058043 |
tttcaataaacatattacaagtgtttgaccaataaaca |
49058080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 4029986 - 4030034
Alignment:
| Q |
121 |
aacattttcaataaacatattacaaatgtttaaccaataaacacttcat |
169 |
Q |
| |
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||||||||||||||||||||| |||||| |||| |||||| || ||||| |
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|
| T |
4029986 |
aacattttcaataaacatattccaaatgattaatcaataaccatttcat |
4030034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 24381925 - 24381873
Alignment:
| Q |
117 |
tgtcaacattttcaataaacatattacaaatgtttaaccaataaacacttcat |
169 |
Q |
| |
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|||||| |||| |||||||||| |||||||| |||||||||||||| ||||| |
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|
| T |
24381925 |
tgtcaatatttccaataaacatgttacaaatagttaaccaataaacatttcat |
24381873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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