View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5264_low_13 (Length: 243)
Name: NF5264_low_13
Description: NF5264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5264_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 16783590 - 16783801
Alignment:
| Q |
15 |
cacagagatatgaaattccaattaaacatatcaagaaattactctatacaacagacaattgaaaaaatataacggggaacatggtattcaaacatgagtg |
114 |
Q |
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| T |
16783590 |
cacagagatatgaaattccaattaaacatatcaagaaattactctatacaacagacaattgaaaaaatataacggggaacatggtattcaaacatgagtg |
16783689 |
T |
|
| Q |
115 |
atgcttatcgcataacgtactctcataaaatacagaacattgacaaaatgccaagaattgtaatccatttcaaatgtaattaattcaacagcaaagataa |
214 |
Q |
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| T |
16783690 |
atgcttatcgcataacgtactctcataaaatacagaacattgacaaaatgccaagaattgtaatccatttcaaatgtaattaattcaacagcaaagataa |
16783789 |
T |
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| Q |
215 |
cagagcaatatg |
226 |
Q |
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|||||||||||| |
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| T |
16783790 |
cagagcaatatg |
16783801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 32792156 - 32792023
Alignment:
| Q |
78 |
aaaatataacggggaacatggtattcaaacatgagtgatgcttatcgcataacgtactctcataaaatacagaacattgacaaaatgccaagaattgtaa |
177 |
Q |
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| T |
32792156 |
aaaatataatgcggaacacggtgttcaagcatgtgtgatgtttaacgcatattgtactcacataaaatacataacattgacaaaatgccaagaattgtaa |
32792057 |
T |
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| Q |
178 |
tccatttcaaatgtaattaattcaacagcaaaga |
211 |
Q |
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| T |
32792056 |
tccatatcaagtgtaattaattcaacagtaaaga |
32792023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 21628349 - 21628288
Alignment:
| Q |
160 |
aaatgccaagaattgtaatccatttcaaatgtaattaattcaacagcaaagataacagagca |
221 |
Q |
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| T |
21628349 |
aaatgccaagaattgtaatccatatcaaatgtaattaattcaacagcaaagagaacggagca |
21628288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 14530910 - 14530867
Alignment:
| Q |
125 |
cataacgtactctcataaaatacagaacattgacaaaatgccaa |
168 |
Q |
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| T |
14530910 |
cataatgtactcacataaaatacagaacattgacaaaatgccaa |
14530867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 21628518 - 21628475
Alignment:
| Q |
18 |
agagatatgaaattccaattaaacatatcaagaaattactctat |
61 |
Q |
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| T |
21628518 |
agagatatgaaattccaattaacaatatcaacaaattactctat |
21628475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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