View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5264_low_17 (Length: 213)
Name: NF5264_low_17
Description: NF5264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5264_low_17 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 752714 - 752914
Alignment:
| Q |
1 |
tacaaatcaaatatcaaaaccgaacagatcccctccta----acacaatttgaaaagttgcaaaatcagacccgcacagccgcaccagaggtacaaaagc |
96 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
752714 |
tacaaatcaaatatcaaa-ccgaacagatcccctcctagtaaacacaatctgaaaagttgcaaaatcagacccgcacagccgcaccagaggtacaaaagt |
752812 |
T |
|
| Q |
97 |
tggggaattcccaccagaaaaatagatggaaaatcacaccaggaccgcatccaaaacctaaaatcacgccataagtgcatccaaagcctcaaatcacatc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
752813 |
tggggaattcccaccagaaaaatagatggaaaatcacaccaggaccgcatccaaaacctaaaatcacgccataagtgcatccaaagcctagaatcacatc |
752912 |
T |
|
| Q |
197 |
ag |
198 |
Q |
| |
|
|| |
|
|
| T |
752913 |
ag |
752914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 850795 - 850595
Alignment:
| Q |
1 |
tacaaatcaaatatcaaaaccgaacagatcccctccta----acacaatttgaaaagttgcaaaatcagacccgcacagccgcaccagaggtacaaaagc |
96 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
850795 |
tacaaatcaaatatcaaa-ccgaacagatcccctcctagtaaacacaatctgaaaagttgcaaaatcagacccgcacagccgcaccagaggtacaaaagt |
850697 |
T |
|
| Q |
97 |
tggggaattcccaccagaaaaatagatggaaaatcacaccaggaccgcatccaaaacctaaaatcacgccataagtgcatccaaagcctcaaatcacatc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
850696 |
tggggaattcccaccagaaaaatagatggaaaatcacaccaggaccgcatccaaaacctaaaatcacgccataagtgcatccaaagcctagaatcacatc |
850597 |
T |
|
| Q |
197 |
ag |
198 |
Q |
| |
|
|| |
|
|
| T |
850596 |
ag |
850595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 51168475 - 51168274
Alignment:
| Q |
1 |
tacaaatcaaatatcaaaaccgaacagatcccctccta----acacaatttgaaaagttgcaaaatcagacccgcacagccgcaccagaggtacaaaagc |
96 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51168475 |
tacaaatcaaatatcaaagccgaacagatcccctcctagtaaacacaatctgaaaagttgcaaaatcagacccgcacagccgcaccagaggtacaaaagc |
51168376 |
T |
|
| Q |
97 |
tggggaattcccaccagaaaaatagatggaaaatcacaccaggaccgcatccaaaacctaaaatcacgccataagtgcatccaaagcctcaaatcacatc |
196 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
51168375 |
tgggaaattcccaccagaaaaatagatggaaaatcacaccaggaccacatccaaaacctgaaatcacgccagaagtgcatccaaagcctagaatcacatc |
51168276 |
T |
|
| Q |
197 |
ag |
198 |
Q |
| |
|
|| |
|
|
| T |
51168275 |
ag |
51168274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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