View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5264_low_2 (Length: 396)
Name: NF5264_low_2
Description: NF5264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5264_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 36504581 - 36504795
Alignment:
| Q |
1 |
attctctacatttgttaagataaatagtgaaagaaatacacaaagaagagataatgcattaacgnnnnnnnnncttccatttaaatctctcttatgtatt |
100 |
Q |
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| T |
36504581 |
attctctacatttgttaagataaatagtgaaagaaatacataaagaagagataacgcattaacatttttttttcttccatttaaatctctcttatgtatt |
36504680 |
T |
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| Q |
101 |
tctctattcaaatgaaatctcgtttattttgaaagattgagatgattgtaactctatatttcaaaaggaggctccaaccccttccctt-tttccttctaa |
199 |
Q |
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| T |
36504681 |
tctctattcaaatgaaatctcgtttattttgaaagattgagatgattgtaactctatatttcaaaaggaggctccaaccccttcccttatttccttctaa |
36504780 |
T |
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| Q |
200 |
gtaacttataagaca |
214 |
Q |
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| T |
36504781 |
ttaacttataagaca |
36504795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 252 - 396
Target Start/End: Original strand, 36504843 - 36504987
Alignment:
| Q |
252 |
ctcgaattacactatgaaatgattaaaaatatctctaaattgaaattaagtttttaattgtttgcttacattacattctctcctaatcctaaaccctttc |
351 |
Q |
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| T |
36504843 |
ctcgaattacactctgaaatgactaaaaatatctctaaattgaaattaaatttttaattgtgtgcttacattacattctctcctaatcctaaaccctttc |
36504942 |
T |
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| Q |
352 |
tcttctcttccttcatatttttccttcttttataatttcgcagcc |
396 |
Q |
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| T |
36504943 |
tcttctcttccttcatatctttccttcttttataatttcgcagcc |
36504987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 250
Target Start/End: Original strand, 36504846 - 36504874
Alignment:
| Q |
222 |
gaattacactctgaaatgactaaaaatat |
250 |
Q |
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| T |
36504846 |
gaattacactctgaaatgactaaaaatat |
36504874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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