View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5264_low_3 (Length: 393)
Name: NF5264_low_3
Description: NF5264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5264_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 10803832 - 10804207
Alignment:
| Q |
1 |
tcctagcagcaaaagttccagtcccaacactaaaatccaatccaattctaatctctcctaactttattccaagaacatcatctatnnnnnnnccagcttc |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10803832 |
tcctagcagcaaaagttccagttccaacactaaaatccaatccaattctaatctctcctaactttattccaagaacatcatctataaaaaaatcagcttc |
10803931 |
T |
|
| Q |
101 |
acctgtttgatttgaaattgaatcaccattcaatctcatccatctcggcatctcatgatcggtaagattaaaacaatcggcgcatttgaagaatcccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10803932 |
acctgtttgatttgaaattgaatcaccattcaatctcatccatctcggcatctcatgatcggtaagattaaaacaatcggcgcatttgaagaatcccttt |
10804031 |
T |
|
| Q |
201 |
cgagcattgttattgcttgctagacaagtaaagttcttgcacctatattgactccatctaacatttctgtcatcagggagtttccacatggattcattaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10804032 |
cgagcattgttattgcttgctagacaagtaaagttcttgcacctatattgactccatctaacatttctgtcatcagggagtttccacatggattcattaa |
10804131 |
T |
|
| Q |
301 |
tagggaatggtttactgtatagcttaggtgatcttgataaacaccttctccttggtagaggatcacatccatgaac |
376 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10804132 |
tggggaatggtttactgtatagcttaggtgatcttgataaacaccttctccttggtagaggatcacatccatgaac |
10804207 |
T |
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