View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5264_low_4 (Length: 383)
Name: NF5264_low_4
Description: NF5264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5264_low_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 32 - 383
Target Start/End: Original strand, 7431051 - 7431402
Alignment:
| Q |
32 |
attgcagcagtatatgtagtttctctacctaaagagtgtactgatgtagaaaacaaattaattccatgtaatcagaattctctgccaacaatgctaatta |
131 |
Q |
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||||||| || ||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
7431051 |
attgcaggagcatatgtagtttctctgcctaaatagtgtactgatgcagaaaacaaattaattccatgtaatcagaattctctgccagctatgctaatta |
7431150 |
T |
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| Q |
132 |
attatatacaattaacctataaaaacaaattaatgcagtcaaacattgcagcctacgtaatcggaatgcttttacaacaaaatcagaccacatattctca |
231 |
Q |
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||| |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
7431151 |
attctatacagttagcctataaaaacaaattaatgcagtcaaaaattgcagcctacgtaatcagaatgcttttacaacaaaatcagaccccatattctca |
7431250 |
T |
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| Q |
232 |
ttacaagtaatagaaaacaaggtggcctaaacattcatgtagcagtttaatcaggtaaccaaggtggccttaacaaagtgatcaaatattctcattacaa |
331 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
7431251 |
ttacaagtaacagaaaacaaggtggcctaaacattcatgtagcagtttaatcaggtaaccaaggtggccttaataaagtgaccaaatattctcattacaa |
7431350 |
T |
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| Q |
332 |
ggaacagagtaatcataacgctcttttactcttgcaaatttgctctttgaat |
383 |
Q |
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| T |
7431351 |
ggaacagagtaatcataatgctcttttactcttgcaaatttgctctttgaat |
7431402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 14606036 - 14605830
Alignment:
| Q |
32 |
attgcagcagtatatgtagtttctctacctaaagagtgtactgatgtagaaaacaaattaattccatgtaatcagaattctctgccaacaatgctaatta |
131 |
Q |
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| T |
14606036 |
attgcaggagcatatgtagtttctctgcccaaagagtgtactgatgcagaaaacaaattaattccatgtaatcagaattctctgccaactatgctaatta |
14605937 |
T |
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| Q |
132 |
attatatacaattaacctataaaaacaaattaatgcagtcaaacattgcagcctacgtaatcggaatgcttttacaacaaaatcagaccacatattctca |
231 |
Q |
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||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14605936 |
attctatacaattagcctataaaaacaaattaatgcagtcaaagattgcagcctacataatcggaatgcttttacaacaaaatcagaccacatgttctca |
14605837 |
T |
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| Q |
232 |
ttacaag |
238 |
Q |
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||||||| |
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| T |
14605836 |
ttacaag |
14605830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 320 - 383
Target Start/End: Complemental strand, 14605842 - 14605779
Alignment:
| Q |
320 |
ttctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttgaat |
383 |
Q |
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| T |
14605842 |
ttctcattacaagcaacagagtaatcataatgctcttttactcttgcaaatttgatctttgaat |
14605779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 5021042 - 5021108
Alignment:
| Q |
315 |
aaatattctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga |
381 |
Q |
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| T |
5021042 |
aaatattctcattacaaggaacagagtaatcagaatgctctttcattattgcaaatttgctctttga |
5021108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 34630359 - 34630293
Alignment:
| Q |
315 |
aaatattctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga |
381 |
Q |
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| T |
34630359 |
aaatattctcattataaggaacagagtaatcaaaatgctctttcattattgcaaatttgctctttga |
34630293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 22122620 - 22122686
Alignment:
| Q |
315 |
aaatattctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga |
381 |
Q |
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|||||||||||||||||||||||||||||| | || ||||||| | | ||||||||||| ||||||| |
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| T |
22122620 |
aaatattctcattacaaggaacagagtaattagaatgctctttcattattgcaaatttgttctttga |
22122686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 26340464 - 26340341
Alignment:
| Q |
112 |
tctgccaacaatgctaattaattatatacaattaacctataaaaacaaattaatgcagtcaaacattgcagcctacgtaatcggaatgctttta-caaca |
210 |
Q |
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||||||| | ||||||||||||| |||||||||| ||||| |||||||||||||| ||||||| ||| |||||| |||||| |||||| | | || || |
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| T |
26340464 |
tctgccagctatgctaattaattctatacaattagcctattaaaacaaattaatgtagtcaaagattttagcctatgtaatcacaatgctctaatcatca |
26340365 |
T |
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| Q |
211 |
aaatcagaccacatattctcatta |
234 |
Q |
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|||| |||||| ||| |||||||| |
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| T |
26340364 |
aaataagaccaaatactctcatta |
26340341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 5595633 - 5595699
Alignment:
| Q |
315 |
aaatattctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga |
381 |
Q |
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||||||||||||||||||||||| |||||||| || ||||||| | | ||||||||||||||||||| |
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| T |
5595633 |
aaatattctcattacaaggaacatagtaatcagaatgctctttcattattgcaaatttgctctttga |
5595699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 5601826 - 5601892
Alignment:
| Q |
315 |
aaatattctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga |
381 |
Q |
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||||||||||||||||||||||| |||||||| || ||||||| | | ||||||||||||||||||| |
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| T |
5601826 |
aaatattctcattacaaggaacatagtaatcagaatgctctttcattattgcaaatttgctctttga |
5601892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 320 - 381
Target Start/End: Complemental strand, 28959731 - 28959670
Alignment:
| Q |
320 |
ttctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga |
381 |
Q |
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||||||||||||||||||||||||||| || ||||||| | | ||||||||||||||||||| |
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| T |
28959731 |
ttctcattacaaggaacagagtaatcagaatgctctttcattattgcaaatttgctctttga |
28959670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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