View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5264_low_6 (Length: 372)
Name: NF5264_low_6
Description: NF5264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5264_low_6 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 213 - 337
Target Start/End: Original strand, 6323034 - 6323159
Alignment:
| Q |
213 |
accattctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatcttttttcaatctatattcattcaatatgaatttctatg |
312 |
Q |
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| T |
6323034 |
accattctagttagtatcatagagaactataaataaatcacttcattgcatctcatcttatcttttttcaatctatattcattcaatatgaatttctatg |
6323133 |
T |
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| Q |
313 |
agtattctt-ccatgaatacacataa |
337 |
Q |
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| T |
6323134 |
agtattcttcccatgaatacacataa |
6323159 |
T |
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Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 6322836 - 6322931
Alignment:
| Q |
18 |
aaagcagttgctgacattgttgcaaatgtttaacaagaagttcaacatgctgatgc---aaatgagggagaacatattcaacctaaaattcaagat |
110 |
Q |
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| T |
6322836 |
aaagcagttgctgacattgttgcaaatgtttaacaagaagttcaacatgctgatgcaaaaaatgagggagaacatatacaacctaaaattcaagat |
6322931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 217 - 336
Target Start/End: Original strand, 6324120 - 6324240
Alignment:
| Q |
217 |
ttctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatcttttttcaatctatattcattcaatatgaatttctatgagta |
316 |
Q |
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||||||||||||| |||||| |||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6324120 |
ttctagttagtattatagaggactataaatatgtcacttcattgtatcccattttatcttttttcaatctatattcattcaatatgaattttaatgagta |
6324219 |
T |
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| Q |
317 |
ttcttc-catgaatacacata |
336 |
Q |
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| T |
6324220 |
ttcttctcataaatacacata |
6324240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 20516053 - 20515991
Alignment:
| Q |
275 |
ttttttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacata |
336 |
Q |
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| T |
20516053 |
tttttgcaatctatattcattcaatatgaatttctatgagtattcttctcatgattacacata |
20515991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 279 - 367
Target Start/End: Original strand, 15198 - 15287
Alignment:
| Q |
279 |
ttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctt |
367 |
Q |
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| T |
15198 |
ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatctt |
15287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 279 - 367
Target Start/End: Complemental strand, 2161908 - 2161819
Alignment:
| Q |
279 |
ttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctt |
367 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| || ||| | |||||||| | |||| ||||| |
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| T |
2161908 |
ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatctt |
2161819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 3274554 - 3274489
Alignment:
| Q |
272 |
atcttttttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacata |
336 |
Q |
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| T |
3274554 |
atcttttatcaatctatatttattcaatataaatctatacgagtattcttcacatgaatacacata |
3274489 |
T |
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