View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5264_low_8 (Length: 346)
Name: NF5264_low_8
Description: NF5264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5264_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 41620216 - 41619907
Alignment:
| Q |
15 |
gcttcacatcgatttgt-taaaatgctatctcattctaaagaggtttgtaagctcattgaatatatcctacacttaatcccatagctcaaaatcatcata |
113 |
Q |
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| T |
41620216 |
gcttcacattgatttgtgtaaaaggctatctcattctaaagaggtttgtaagctcattgaatatatcctacacttaatcccatagctcaaaatcatcata |
41620117 |
T |
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| Q |
114 |
aacacaataaccatcgatcatgattcataagcaagactctaggaaaattgaggtgttgcactgttgaacaatattactattgttttgagatcccttttcg |
213 |
Q |
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| T |
41620116 |
aacacaataaccatcga-------tcataagcaagactataggaaaattgaggtgttgcattgtcgaacaatattactattgttttgagatcccttttct |
41620024 |
T |
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| Q |
214 |
ttcacaaaaggttataaaataatgaaaatttggcaaac--nnnnnnnnttcttatgattggtaggatttttatgtgatctctttactaagtgtgatgaag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41620023 |
ttcacaaaaggttataaaataatgaaaatttggcaaacaaaaaaagaattcttatgattggtaggatttttatgtgatctctttactaagtgtgataaag |
41619924 |
T |
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| Q |
312 |
tgacaaatacaacatat |
328 |
Q |
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|||||||||||||||| |
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| T |
41619923 |
ggacaaatacaacatat |
41619907 |
T |
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