View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265-Insertion-1 (Length: 197)
Name: NF5265-Insertion-1
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 33082391 - 33082208
Alignment:
| Q |
13 |
gaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaaacatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33082391 |
gaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaagcatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcct |
33082292 |
T |
|
| Q |
113 |
aaactgataaag-gaagtatacagaaacggaag-aaaggcagcagaaaaacgcagtgaaatggg-agagagggttccaacaagg |
193 |
Q |
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| T |
33082291 |
aaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaagagagggttcaaacaagg |
33082208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 33092251 - 33092068
Alignment:
| Q |
13 |
gaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaaacatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33092251 |
gaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaagcatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcct |
33092152 |
T |
|
| Q |
113 |
aaactgataaag-gaagtatacagaaacggaag-aaaggcagcagaaaaacgcagtgaaatggg-agagagggttccaacaagg |
193 |
Q |
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| T |
33092151 |
aaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaagagagggttcaaacaagg |
33092068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 33099747 - 33099564
Alignment:
| Q |
13 |
gaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaaacatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33099747 |
gaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaagcatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcct |
33099648 |
T |
|
| Q |
113 |
aaactgataaag-gaagtatacagaaacggaag-aaaggcagcagaaaaacgcagtgaaatggg-agagagggttccaacaagg |
193 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
33099647 |
aaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaagagagggttcaaacaagg |
33099564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 33072655 - 33072475
Alignment:
| Q |
13 |
gaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaaacatggaaagcggcaatgaagagagcttcgggaattaaggt-------tcatga |
105 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| | || ||||||||||||||||||||||| |||||| |
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| T |
33072655 |
gaagaagaatgattctgagaagggtgaagctattgctaagaaggaagcatggaaagtagtaacaaagagagcttcgggaattaaggttcatgaatcatga |
33072556 |
T |
|
| Q |
106 |
tgatcctaaactgataaaggaagtatacagaaacggaagaa-aggcagcagaaaaacgcagtgaaatggg-agagagggttc |
185 |
Q |
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|||||||||| |||| |||||| |||||||| ||||||| ||||| || ||||| |||| |||||||| ||||||||||| |
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| T |
33072555 |
tgatcctaaattgat-aaggaaaagtacagaaaaggaagaagaggcaacataaaaatgcagagaaatgggaagagagggttc |
33072475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 3931540 - 3931429
Alignment:
| Q |
13 |
gaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaaacatggaaagcggcaatgaagagagcttcgggaattaaggttcatgatgatcct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||||| ||||||||||| ||||||||||| |
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| T |
3931540 |
gaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaagcatggaaagcagcaatggacagagcttcaggaattaaggtccatgatgatccc |
3931441 |
T |
|
| Q |
113 |
aaactgataaag |
124 |
Q |
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|||||||||||| |
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| T |
3931440 |
aaactgataaag |
3931429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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