View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5265-Insertion-2 (Length: 651)
Name: NF5265-Insertion-2
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265-Insertion-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 153; Significance: 9e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 191 - 451
Target Start/End: Original strand, 907577 - 907828
Alignment:
| Q |
191 |
cctatgattagttaacaagatttaattttgaagataaaaatcgaaaacccatttgatgtaaaataatgggtggtgattaaatcaatgaaattaatggaat |
290 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
907577 |
cctatgattagtaaacaagatttaattttgaagataaaaatcgaaaaacaatttgatataaaataatggatggtgattaaatcaatgaaattaacggaat |
907676 |
T |
|
| Q |
291 |
ttgaatagaaannnnnnnnnacatgtgactttgatgaaaaataacgattgagatttaaatcgaaacaatgactatggaattgttgaattggatgaaattg |
390 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
907677 |
atgaatag-aatttttttttacatgtgactttgatgaaaaataacgattgaaatttaaatcgaaacaatgactatg--------gaattggatgaaattg |
907767 |
T |
|
| Q |
391 |
aaattgaggaggatgtgagtgaggactaacctgatgaagttgctgatcggtgatcgatcga |
451 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
907768 |
aaattaaggaagatgtgagtgaggactaacctgatgaagttgctgatcggagatcgatcga |
907828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 907394 - 907522
Alignment:
| Q |
8 |
ttttcttcttgagaagagcatgtcctcttgttgctccaaccaaacgtgccttaaccactccaagcattgtcactgtggggaccacattcaaacgttgtga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
907394 |
ttttcttcttgagaagagcatgtcctcttgttgctccaaccaaacgtgccttaaccactccaagcattgtcactgtggggaccacattcaaacgttgtga |
907493 |
T |
|
| Q |
108 |
ttgccccgacatctttttcactcttctac |
136 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
907494 |
ttgccccgacatctttttcactcttctac |
907522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 564 - 651
Target Start/End: Original strand, 907921 - 908008
Alignment:
| Q |
564 |
caattattggatataactatttattgggcttttaattgtgacttaaggggcactatgtaagttgaatatgaaatttgctatttaggta |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
907921 |
caattattggatataactatttattgggcttttaattgtgacttaaggagcactatgtaagttgaatatgaaatttactatttaggta |
908008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University