View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_high_11 (Length: 444)
Name: NF5265_high_11
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 27677100 - 27676892
Alignment:
| Q |
4 |
atgtcgaataatatgtgcgaaactctattataatgcgtcgttcttttcaacaccaaaaaggccaagcagatcattcattatttatacatgaaaaaatata |
103 |
Q |
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| T |
27677100 |
atgtcaaataaaatgtgcgaaactctattataatgcgtcgttcttttcaacaccaaaaaggccaagcagatcattcattatttatacatgaaaaaatata |
27677001 |
T |
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| Q |
104 |
attagtctgctcaacactatttctttatggagaacacagtatcatgaata-tttatttgcatgttgttattttttataatttgagtttgaataagcaccg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27677000 |
attagtctgctcaacactatttctttatggagaacacagtatcatgaatattttatttgcatgttgttattttttataatttgagtttgaataagcaccg |
27676901 |
T |
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| Q |
203 |
ttggctttc |
211 |
Q |
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||||||||| |
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| T |
27676900 |
ttggctttc |
27676892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 237 - 426
Target Start/End: Complemental strand, 27676906 - 27676717
Alignment:
| Q |
237 |
gcacagttggctttctgaatactttaatacattttagtatcttatagatagattctatggaatccgtatccacccactccatcactatgtctaagcgcac |
336 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27676906 |
gcaccgttggctttctgaatactttaatacattttagtatctcatagatagattctatggaatccgtatccacccactccatcactatgtctaagcgcac |
27676807 |
T |
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| Q |
337 |
caaaacttgctcctagaaatatgcatcttcttttttcttattttctattttggaagtgttctacatttccatgaatcatggatgcaacct |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27676806 |
caaaacttgctcctagaaatatgcatcttcttttttcttattttctattttggaagtgttctacatttccatgaatcatgaatgcaacct |
27676717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 29385290 - 29385232
Alignment:
| Q |
223 |
atcctatgccccatgcacagttggctttctgaatactttaatacattttagtatcttata |
282 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |
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| T |
29385290 |
atcctatgccccatgcacagttggctttctgaatactctaat-ctttttagtatcttata |
29385232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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