View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_high_13 (Length: 432)
Name: NF5265_high_13
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 416
Target Start/End: Original strand, 6025905 - 6026322
Alignment:
| Q |
9 |
acatcatcaaactatattttaagaaatgagaaatag------catatctaacacnnnnnnnc----tttaagatgaaactttcatttgattgaaattcaa |
98 |
Q |
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| T |
6025905 |
acatcatcaaactatattttaagaaatgagaaatagaaatagcatatctaacacttttttttctcttttaagatgaaacgttcatttgattgaaattcaa |
6026004 |
T |
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| Q |
99 |
tcatgtgataacatatatgactcataattgttttcacattttcgtgtatatttcagagacttataaggtcaaagtgaagcaaggaaaaacctacttacta |
198 |
Q |
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| T |
6026005 |
tcatgtgataacatatatggctcataattattttcacattttcgtgtatatttcagagacttacaaggtcaaagtgaagcaaggaaaaacctacttacta |
6026104 |
T |
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| Q |
199 |
cgcattatcaatgctgcactcaatgaacaacatttcttcaagatagcaaaccatagtttcacagttgtagctatggatgctatctacacagaacactata |
298 |
Q |
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| T |
6026105 |
cgcattatcaatgctgcactcaatgaacaacatttcttcaagatagcaaaccatagtttcacagttgtagctatggatgctatctacacagaacactata |
6026204 |
T |
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| Q |
299 |
acacggatgttgtggtgcttgcgcccggccaaaccgttgacgttctcttgaaaactaaccaagttgttgattcttattatatggttttcacaccataccg |
398 |
Q |
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| T |
6026205 |
acacggatgttgtggtgcttgcgcccggccaaaccgttgacgttctcttaaaaactaaccaagttgttgattcttattacatggttttcacaccataccg |
6026304 |
T |
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| Q |
399 |
ttcttcaaatgttggaac |
416 |
Q |
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| T |
6026305 |
ttcttcaaatgttggaac |
6026322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 4383652 - 4383713
Alignment:
| Q |
184 |
aaaacctacttactacgcattatcaatgctgcactcaatgaacaacatttcttcaagatagc |
245 |
Q |
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| T |
4383652 |
aaaacctatctactaagaatcatcaatgctgcactcaatgaagaacttttcttcaaaatagc |
4383713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 23975627 - 23975716
Alignment:
| Q |
190 |
tacttactacgcattatcaatgctgcactcaatgaacaa-catttcttcaagatagcaaaccatagtttcacagttgtagctatggatgct |
279 |
Q |
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||||| ||||| || ||||||| |||||||||| ||||| | ||||||||| |||||||| || |||||||||||||| || |||||||| |
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| T |
23975627 |
tacttgctacggataatcaatgttgcactcaat-aacaatcttttcttcaaaatagcaaatcacagtttcacagttgttgcactggatgct |
23975716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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