View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_high_16 (Length: 420)
Name: NF5265_high_16
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 21 - 411
Target Start/End: Original strand, 38769405 - 38769801
Alignment:
| Q |
21 |
aagtattataaggtatttggatattatctttcttttcccttacta------atatgttgtctttttataattagattctcacctcaaacaaatagtaaca |
114 |
Q |
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| T |
38769405 |
aagtattataaggtatttggatattctctttcttttcccttactataatatatatgttctctttttataattagattctcacctcaaacaaatagtaaca |
38769504 |
T |
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| Q |
115 |
aattactaacaattaagcatgctactatataaaaagaaagatatatgtttatatgctcacaaatttgttggccattgtaacaggtggatatagacgagct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38769505 |
aattactaacaattaagcatgctactatataaaaagaaagatatatgtttatatgctcacaaatttgttggccattgtaacaggtggatatagacgagct |
38769604 |
T |
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| Q |
215 |
atacaaaagcttgaccggagataaacctaaattttgaggttaccaccttctagactcggatatgtctatttaatagtcctttgcaatagtttgttgtgtg |
314 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38769605 |
atacaaaagtttgaccggagataaacctaaattttgaggttactaccttctagactcggatatgtctatttaatagtcctttgcaatagtttgttgtgtg |
38769704 |
T |
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| Q |
315 |
atgtacctaaagttgctaaagtgttgtacttaatgttgaaagtgtacacgagaacaatctatttcgtttgaagaaaacaagtgtttgaatttgatga |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38769705 |
atgtacctaaagttgctaaagtgttgtacttaatgttgaaagtgtacacgagaacaatctatttcgtttgaagaaaacaagtgtttgaatttgatga |
38769801 |
T |
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