View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5265_high_2 (Length: 628)
Name: NF5265_high_2
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_2 |
 | |
|
| [»] scaffold0059 (2 HSPs) |
| | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
| [»] scaffold0142 (2 HSPs) |
| | |
|
| [»] scaffold0273 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 20246488 - 20246903
Alignment:
| Q |
18 |
atcccatgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246488 |
atcccatgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagac |
20246587 |
T |
|
| Q |
118 |
tcacttggagagcaccaagggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcatttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246588 |
tcacttggagagcaccaagggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcatttt |
20246687 |
T |
|
| Q |
218 |
gagtaaggattgaggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagtttta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246688 |
gagtaaggattgaggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagtttta |
20246787 |
T |
|
| Q |
318 |
agatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246788 |
agatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcct |
20246887 |
T |
|
| Q |
418 |
ccatgtccttgggatt |
433 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20246888 |
ccatgtccttgggatt |
20246903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 22140472 - 22140887
Alignment:
| Q |
18 |
atcccatgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140472 |
atcccatgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagac |
22140571 |
T |
|
| Q |
118 |
tcacttggagagcaccaagggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcatttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140572 |
tcacttggagagcaccaagggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcatttt |
22140671 |
T |
|
| Q |
218 |
gagtaaggattgaggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagtttta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140672 |
gagtaaggattgaggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagtttta |
22140771 |
T |
|
| Q |
318 |
agatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140772 |
agatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcct |
22140871 |
T |
|
| Q |
418 |
ccatgtccttgggatt |
433 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22140872 |
ccatgtccttgggatt |
22140887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 13778739 - 13778647
Alignment:
| Q |
231 |
ggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagttttaagatga |
323 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||||||| || |||| | || | ||| |||||||| ||||||| ||||||||| |
|
|
| T |
13778739 |
ggcaacaaatttacagcagcaccaccatcgatgagcactttgttaatcccaacattattgattttagcttggataaacaaaggcttaagatga |
13778647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 22 - 572
Target Start/End: Complemental strand, 11885569 - 11885020
Alignment:
| Q |
22 |
catgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagactcac |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
11885569 |
catgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaatttg-tctgaccacaattcccactgttagactcac |
11885471 |
T |
|
| Q |
122 |
ttggagagcaccaagggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcattttgagt |
221 |
Q |
| |
|
||| |||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
11885470 |
ttgaagagcaccaaggaaatgactagcctttccttcataatttgacagaattacattatgacgcttcaagtctttgtcggtcttgtcaatccttttgagt |
11885371 |
T |
|
| Q |
222 |
aaggattgaggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagttttaagat |
321 |
Q |
| |
|
||||| |||||||||||||| |||| ||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
11885370 |
aaggactgaggcatcaaattgacagtagcacaaccgtcgaccaacactttgttgatgccaatctcatctactttggcttggatgaacaaaggtttaagat |
11885271 |
T |
|
| Q |
322 |
gattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcctccat |
421 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| ||| || || || || ||||| |||||||||||| || || |||||||||||||||||||| |
|
|
| T |
11885270 |
gattcttcatcgaatcatcaggattttcgaatatggctttccaataatcttcagggccattatttgttacaaagtaccatatgggtttgtattcctccat |
11885171 |
T |
|
| Q |
422 |
gtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaagtcc |
521 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| | ||| |||||||||| |||||| |
|
|
| T |
11885170 |
atccttgggatcgaactcttcctctgaatcctcaacttcagacaccatatcatattcagctggcaaaatggaaacaacattgcatatgacgtcgaagtcc |
11885071 |
T |
|
| Q |
522 |
ggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcc |
572 |
Q |
| |
|
|||| ||||||||| || |||||| |||| ||||||||||||||||||||| |
|
|
| T |
11885070 |
ggttttgaatccatgaactctgaatccaattcatcatcttcatcaggatcc |
11885020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 14930060 - 14930174
Alignment:
| Q |
22 |
catgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagactcac |
121 |
Q |
| |
|
|||| ||||||||||| | || | ||| |||||||| ||||| ||||| |||||||||||||||||||||||| |||| |||||| || ||| |||| |
|
|
| T |
14930060 |
catgtatccattctctccataggagcaaattgaagttggcttttgatggaactaccatgaacaaagttggtctggtgacagatcccacagtgagattcac |
14930159 |
T |
|
| Q |
122 |
ttggagagcaccaag |
136 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
14930160 |
tttgagagcaccaag |
14930174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 18474103 - 18474043
Alignment:
| Q |
247 |
cagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaa |
307 |
Q |
| |
|
||||||| ||||| ||||| |||||||||| |||||||| || ||||||||||| ||||| |
|
|
| T |
18474103 |
cagcaccgccatctaccaatactttgttgactccaatctcgtcaactttggcttgaatgaa |
18474043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 24988492 - 24987915
Alignment:
| Q |
18 |
atcccatgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagac |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||||||| |||| | |||||||||| |||||| |
|
|
| T |
24988492 |
atcccatgaatccactctcttcctaacaacaagttgaagttagctttggataggaccaccatgaaaaaagttggtatgactaaagttcccaccattagac |
24988393 |
T |
|
| Q |
118 |
tcacttggagagcaccaagggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcatttt |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
24988392 |
tcacttgaagagcaccaagggaatgaccagcctttcctacataatttgattgaattacattatgaggcttaaaatctttgtcggtcttgccaatcctttt |
24988293 |
T |
|
| Q |
218 |
gagtaaggattgaggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagtttta |
317 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |
|
|
| T |
24988292 |
aagtagggattgaggcatcagattgacagcagcaccaccatcgcccaacactttgttgataccaatatcatccactttggcttgaatgaacaaaggttta |
24988193 |
T |
|
| Q |
318 |
agatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcct |
417 |
Q |
| |
|
| |||| ||||||| ||||||||| | | ||| ||||||| ||| |||| || || ||| |||||| | | || |||||||||||||||||||| | |
|
|
| T |
24988192 |
atatgactcttcattgaatcatcaggctgttcaaatatggctttctgattatcttcagatacatcat---tcaataagtagcacatgggtttgtattctt |
24988096 |
T |
|
| Q |
418 |
ccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaa |
517 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||| ||||||||||| | ||||||||| |||||||| |||||||||| ||| ||| ||||||| || || |
|
|
| T |
24988095 |
ccatgtccttgggatcgaacttttactctgaatcatcgacttcagatatcatatcatattcagctggtaaaatggaaaccaaattgcatatgacatcgaa |
24987996 |
T |
|
| Q |
518 |
gtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcctctttgactaggggaagagactacct |
598 |
Q |
| |
|
||| ||||||||||| |||| ||| || || ||||||||||||| ||||||||| | ||||| ||||||||| |||| |
|
|
| T |
24987995 |
gtctggttctgaatctgtaaatcttgatcctaactcatcatcttcattaggatcctcctcgactaaaggaagagacaacct |
24987915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 18 - 532
Target Start/End: Complemental strand, 25567454 - 25566944
Alignment:
| Q |
18 |
atcccatgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagac |
117 |
Q |
| |
|
||||||||||||||||| || || ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||| | |
|
|
| T |
25567454 |
atcccatgaatccattccctccccaacaataagttgaagttagctttcgatgggaccaccatgaacaaagttggtctaaccatggttccctccgttaagc |
25567355 |
T |
|
| Q |
118 |
tcacttggagagcaccaagggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcatttt |
217 |
Q |
| |
|
||| ||| ||||||||| |||||||| |||||||||||||| | |||| ||||| ||||||||||||||||| |||||||||||| |||| | |||| |
|
|
| T |
25567354 |
atactctgagtgcaccaaggaaatgaccaccctttccttcataactcgacataattagattatgaggcttcaaatttttgtcggtctttccaaccttttt |
25567255 |
T |
|
| Q |
218 |
gagtaaggattgaggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagtttta |
317 |
Q |
| |
|
|||||||||||||||||||| ||| ||| || ||||||| ||||||||||||||||| ||| || |||||||||||||| |||||||||||||| ||| |
|
|
| T |
25567254 |
gagtaaggattgaggcatcagattaacaacatcaccaccgtcgaccaacactttgttaataataacctcatccactttggattggatgaacaaaggtttg |
25567155 |
T |
|
| Q |
318 |
agatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcct |
417 |
Q |
| |
|
|||||| |||||||||||||||| || | ||| ||||||| ||| ||| || || ||||||||||| | ||||||||||||||||||| ||| || |
|
|
| T |
25567154 |
agatgactcttcatcgaatcatctagctgttcaaatatggctttacgattatcttcagagccatcat---tcacaaaatagcacatgggttggtactctc |
25567058 |
T |
|
| Q |
418 |
ccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaa |
517 |
Q |
| |
|
||||| |||| | | ||||||||| | || | | || || ||||| | ||||||||| || ||||| || ||||||| ||| || ||||||| || || |
|
|
| T |
25567057 |
ccatg-cctttgcttcgaactcttcatttgcaacatcaacctcagatatcatatcatattcggctggtaagatggaaaccaaattacatatgacatctaa |
25566959 |
T |
|
| Q |
518 |
gtccggttctgaatc |
532 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
25566958 |
gtctggttctgaatc |
25566944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 25582524 - 25582646
Alignment:
| Q |
19 |
tcccatgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagact |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25582524 |
tcccatgaatctattctcttcctaacaacaagtggaagttatctttcgatgggactaccatgaacaaagttggtctgaccatagttcccaccgttagact |
25582623 |
T |
|
| Q |
119 |
cacttggagagcaccaagggaat |
141 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
25582624 |
cacttggatagcaccaatggaat |
25582646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 156 - 618
Target Start/End: Original strand, 34616 - 35078
Alignment:
| Q |
156 |
tcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcattttgagtaaggattgaggcatcaaatttacagcagcaccac |
255 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||||||||| || |||||||||||||| ||||||||||||||||| |||||||||| || || |||||| |
|
|
| T |
34616 |
tcataatttgacagaattacattgtgatgcttcaaatccttaccggtcttaccaatccttttgagtaaggattgatgcatcaaattgacgacaacaccac |
34715 |
T |
|
| Q |
256 |
catcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatat |
355 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| | |||| |||||||| ||||| |||||||||||||||||||||| ||| | | ||||||||||| |
|
|
| T |
34716 |
cgtcgaccaacactttgttgataccaatctcatctagtttgccttggatggacaaacgtttaagatgattcttcatcgaaccattaggcttttcgaatat |
34815 |
T |
|
| Q |
356 |
ggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcg |
455 |
Q |
| |
|
|||||| | | || | | |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34816 |
ggatttccgttaatctacaaagccattatttgttacaaagtagcacatggggttgtattcctccatgtccttgggatcgaactcttcctctgaatcctca |
34915 |
T |
|
| Q |
456 |
acttcagacaccatatcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcat |
555 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| || ||| |||||||||| |||||| |||||||||||||||| |||||| |||| |||| |
|
|
| T |
34916 |
acttcagacaccatatcatattcagctggcaaaatggaaaccacattgcatatgacgtcgaagtccagttctgaatccataaactctgaatccaattcat |
35015 |
T |
|
| Q |
556 |
catcttcatcaggatcctctttgactaggggaagagactacctttatttcgctgatcttcttc |
618 |
Q |
| |
|
||||||| ||||||| | ||||| |||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
35016 |
catcttcgtcaggattatttttgaataggggaagagactacctctctttcgctggtcttcttc |
35078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 34521 - 34605
Alignment:
| Q |
23 |
atgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttccc |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34521 |
atgaatccattctctttttaacaacaagttgaagttagctttcgatgcaactaccatgaacaaagttggtctgaccatagttccc |
34605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 573
Target Start/End: Original strand, 4598721 - 4599273
Alignment:
| Q |
18 |
atcccatgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagac |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||| |||||||||||||| | |
|
|
| T |
4598721 |
atcccatgaatccattctctccctaacaacaagttgaagttagccttcgaagggaccaccatgaataaagttggtctaaccatggttcccaccgttaggc |
4598820 |
T |
|
| Q |
118 |
tcacttggagagcaccaagggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcatttt |
217 |
Q |
| |
|
||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||| ||||| ||||| |||||| |||| |
|
|
| T |
4598821 |
tcatttggagagcaccaagaaaatgaccagcctttccttcataatttgacagaatcacagtatgaggcttcaaatcattgtcagtcttgccaatcctttt |
4598920 |
T |
|
| Q |
218 |
gagtaaggattgaggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagtttta |
317 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||| | ||| ||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
4598921 |
gagtaaagattgaggcatcatattgacagcagcaccaccgtcgaccaacactttgttaacaccgatctcattcactttggcttggatgaacaaaggtttg |
4599020 |
T |
|
| Q |
318 |
agatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcct |
417 |
Q |
| |
|
||||||||| |||||||||||||| | | ||| ||||||| ||| ||| || || | |||||| || | |||||||||||||||||| ||||||||| |
|
|
| T |
4599021 |
agatgattcctcatcgaatcatcacgctgttcaaatatggctttccgattatcttcatagccattat---tcacaaaatagcacatgggtctgtattcct |
4599117 |
T |
|
| Q |
418 |
ccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaa |
517 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| || |||||||| | ||| ||||| || ||||| |||| | ||| ||| ||| ||||||| || || |
|
|
| T |
4599118 |
ccattcccttgggatcgaactcttcctctgaatcatcaacttcagatatcatgtcatattcggctggtaaaacgaaaaccaaattgcatatgacatcgaa |
4599217 |
T |
|
| Q |
518 |
gtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcct |
573 |
Q |
| |
|
||| | || ||| || |||| |||| || || ||||||||||||| |||||||| |
|
|
| T |
4599218 |
gtctgattttgactctgtaaatcctgatcctaactcatcatcttcattaggatcct |
4599273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 170 - 576
Target Start/End: Complemental strand, 18218442 - 18218039
Alignment:
| Q |
170 |
aattacattatgaggcttcaaatctttgtcggtcttaccaatcattttgagtaaggattgaggcatcaaatttacagcagcaccaccatcgaccaacact |
269 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||| |
|
|
| T |
18218442 |
aattacgttatgaggtttcaaatctttgtcggtcttgtcaatccttttgagtaaggattgaggcatcagattgacagcagtgccaccgtcgaccaacact |
18218343 |
T |
|
| Q |
270 |
ttgttgataccaatctcatccactttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcat |
369 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||| ||| ||| || |
|
|
| T |
18218342 |
ttgttaacaccaatctcatccactttggcttggatgaacaaagttttgagatgattcttcatcgaatcatcaagctgttcaaatatggctttccgattat |
18218243 |
T |
|
| Q |
370 |
ttttagagccatcatttgttacaaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccat |
469 |
Q |
| |
|
|| |||||||| || | |||||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||||||| || ||||| || | ||| |
|
|
| T |
18218242 |
cttcagagccattat---tcacaaaatagcacatggctttatattcctccatgtctttgggatcgaactcttcctctgaatcatcaacttcggatatcat |
18218146 |
T |
|
| Q |
470 |
atcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcagga |
569 |
Q |
| |
|
|||| | ||||| || |||||||||| ||| ||| ||||||| | ||||| ||||||||||| | | |||| || || ||||||||||||| |||| |
|
|
| T |
18218145 |
atcaaattcagcgggtaaaatggaaaccaaattgcatatgacattgaagtctggttctgaatctgaatatcctgatcctaactcatcatcttcattagga |
18218046 |
T |
|
| Q |
570 |
tcctctt |
576 |
Q |
| |
|
||||||| |
|
|
| T |
18218045 |
tcctctt |
18218039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 20862859 - 20862933
Alignment:
| Q |
227 |
ttgaggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttg |
301 |
Q |
| |
|
|||||| |||| ||| |||||| |||||||||| |||||||| ||||||| ||||| ||||| ||||||||||| |
|
|
| T |
20862859 |
ttgaggtatcagattgacagcaacaccaccatctaccaacaccttgttgactccaatatcatcaactttggcttg |
20862933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 42 - 495
Target Start/End: Original strand, 2283844 - 2284294
Alignment:
| Q |
42 |
aacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagactcacttggagagcaccaagggaat |
141 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |||||||||||||||| ||| |||| ||||||||| |||| || ||||| |||||| |||| |||| |
|
|
| T |
2283844 |
aacaacaacttgaagttagttttcgatgggaccaccatgaacaaagttgttctaaccagagttcccactgttaagcttacttgaagagcatcaagtgaat |
2283943 |
T |
|
| Q |
142 |
gaccatcctttccttcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcattttgagtaaggattgaggcatcaaatt |
241 |
Q |
| |
|
|| | |||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
2283944 |
tacaagcctttccttcataattcgacaaaatcacattatgcggcttcaaatctttgtcggtcttaccaatccttttgagtaaggattgaggcatcagatt |
2284043 |
T |
|
| Q |
242 |
tacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagttttaagatgattcttcatcgaatcatca |
341 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| | |||||||||||||||||| |||||||||||||| || || ||| |||||||| || ||||| |
|
|
| T |
2284044 |
gacagcggcaccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaacaaaggcttgaggtgactcttcatcaaagcatca |
2284143 |
T |
|
| Q |
342 |
agtttttcgaatatggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcctccatgtccttgggattgaactctt |
441 |
Q |
| |
|
||| ||| ||||||||||| ||| || || |||||||| || | ||||||||||||||||||||||| ||| ||| ||||||| |||||||| |
|
|
| T |
2284144 |
ggttgttcaaatatggatttccgattatcttcagagccattat---tcacaaaatagcacatgggtttgtactcccttgtgtatttgggatcgaactctt |
2284240 |
T |
|
| Q |
442 |
cctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaa |
495 |
Q |
| |
|
||||| |||| || ||||| || | ||||||||| | |||||| |||||||||| |
|
|
| T |
2284241 |
cctctaaatcatcaacttccgatatcatatcatacttagctggtaaaatggaaa |
2284294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 16052675 - 16052796
Alignment:
| Q |
21 |
ccatgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagactca |
120 |
Q |
| |
|
||||| ||||||||| |||| || | |||||||||||||||||||||||| || ||| ||||||||||||| | || ||| |||| |||||| ||| |
|
|
| T |
16052675 |
ccatgtatccattcttttcccaagagcaagttgaagttagctttcgatggtacaaccttgaacaaagttggcatcgtaacggttaccacagttagattca |
16052774 |
T |
|
| Q |
121 |
cttggagagcaccaagggaatg |
142 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
16052775 |
cttggagagcaccaagggaatg |
16052796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 576
Target Start/End: Complemental strand, 22034190 - 22034055
Alignment:
| Q |
441 |
tcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaat |
540 |
Q |
| |
|
|||||||| ||||| | ||||||||||| || ||| || || ||||||||||||||| ||| | |||||||| |||| |||||||||||| | |||| |
|
|
| T |
22034190 |
tcctctgattcctccatttcagacaccacattatattctgcatgaaaaatggaaatcacattgcaaatgacgtcgaagttaggttctgaatccttgaaat |
22034091 |
T |
|
| Q |
541 |
ctgaacccaaatcatcatcttcatcaggatcctctt |
576 |
Q |
| |
|
|| || | | ||||||||| || |||||| ||||| |
|
|
| T |
22034090 |
ctaaatctatttcatcatctccaacaggattctctt |
22034055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 438 - 603
Target Start/End: Original strand, 22803746 - 22803911
Alignment:
| Q |
438 |
tcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataa |
537 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| | |||||| ||||| || | || ||| |||||| ||| ||||| |||||||||||||||| |
|
|
| T |
22803746 |
tcttcctctgaatcatcgacttcagataccatatcatattaagctggcaaaattgagaccacattgcatatgaagtcgaagtctggttctgaatccataa |
22803845 |
T |
|
| Q |
538 |
aatctgaacccaaatcatcatcttcatcaggatcctctttgactaggggaagagactacctttatt |
603 |
Q |
| |
|
| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22803846 |
actttgaacccaattcatcatcttcatcagaatcctctttgactaggggaagagacaacctttatt |
22803911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 20063465 - 20063350
Alignment:
| Q |
21 |
ccatgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagactca |
120 |
Q |
| |
|
||||| || ||||| |||||||| | |||||| ||||| ||||| ||||| || || ||||||||||||||||| ||| ||| || || || |||| |
|
|
| T |
20063465 |
ccatgtatgcattcccttcctaaaagcaagttaaagtttgcttttgatggcaccactatgaacaaagttggtctagtaacaaatcctacagtgaggctca |
20063366 |
T |
|
| Q |
121 |
cttggagagcaccaag |
136 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20063365 |
cttggagagcaccaag |
20063350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 111462 - 111371
Alignment:
| Q |
18 |
atcccatgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccac |
109 |
Q |
| |
|
|||||||||||||||| ||| || ||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
111462 |
atcccatgaatccattgtctccccaacaataagttgaagttagcttttgatgggaccaccatgaataaagttggtctaaccacagtttccac |
111371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 107226 - 107189
Alignment:
| Q |
105 |
cccaccgttagactcacttggagagcaccaagggaatg |
142 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
107226 |
cccaccattagacttacttggagagcaccaagggaatg |
107189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 15539 - 15627
Alignment:
| Q |
219 |
agtaaggattgaggcatcaaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaa |
307 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||||||||| ||||||| |||||||| | ||| ||||| |||||| |||| ||||| |
|
|
| T |
15539 |
agtaaagattgaggcatcaaattgacagcaacaccaccatctaccaacaatttgttgactctaatatcatcaactttgacttgaatgaa |
15627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 15367 - 15456
Alignment:
| Q |
47 |
caagttgaagttagctttcgatgggactaccatgaacaaagttggtctgaccacagttcccaccgttagactcacttggagagcaccaag |
136 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||||| |||||| |||| |||||| | ||| |||||| ||||||| |||| |
|
|
| T |
15367 |
caagttgaagttagcttttgatggtaccaccatgaacaaagtcggtctggtaacagatcccacaatgagattcacttagagagcatcaag |
15456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0273 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0273
Description:
Target: scaffold0273; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 21223 - 21291
Alignment:
| Q |
23 |
atgaatccattctcttcctaacaacaagttgaagttagctttcgatgggactaccatgaacaaagttgg |
91 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||| |||| | || |||||||||||||||||||| |
|
|
| T |
21223 |
atgaatccattctcttcctataagcaaattgaagttttcttttaacggcactaccatgaacaaagttgg |
21291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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