View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_high_31 (Length: 335)
Name: NF5265_high_31
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_31 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 36123951 - 36123626
Alignment:
| Q |
9 |
gaagaatattatagaatgtgagaaatgatgaaatagaattaacatttgagaaatgaacatatgtgtaagacattgtgggggtgacattgacaaggtcatg |
108 |
Q |
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| T |
36123951 |
gaagaatattatagaatgtgagaaatgatgaaatagaattaacatttgagaaatgaacatatgtgtaagacattgtgggg-tgacattgacaaggtcatg |
36123853 |
T |
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| Q |
109 |
tcctgcttaggtcctgcaaggcatgagctggttaggccggcttaagaatgtttggacttaatttccaatgatatgattttgttcaatatagttgttatta |
208 |
Q |
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| T |
36123852 |
tcctgcttaggtcctgcaaggcatgagctggttaggccggcttaagaatgtttggacttaatttccaatgatatgattttgttcaatatagttgttatta |
36123753 |
T |
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| Q |
209 |
ttatattttgggagtggcctcgttacacaatgttttctcttgttattggtgagaatgatacttctataacattggtcttctctaaaataatttatttttt |
308 |
Q |
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| T |
36123752 |
ttatattttgggagtggcctcgttacacaatgttttctcttgttattggtgagaatgatacttctataacattggtcttctctaaaataatttatttttt |
36123653 |
T |
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| Q |
309 |
aggggatgatatatctagaataattta |
335 |
Q |
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| T |
36123652 |
aggggatgatatatctagaataattta |
36123626 |
T |
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