View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_high_41 (Length: 303)
Name: NF5265_high_41
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 54980356 - 54980079
Alignment:
| Q |
16 |
tcaagtaccttatatcttctccaagaacagaagctttatccatttgtatgtgcaggaatttgaaaatttgtggccgtcccaaacatgtagctcggttggt |
115 |
Q |
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| T |
54980356 |
tcaagtaccttatatcttctccaagaacagaagctttatccatttgtatgtgcaggaatttgaaaatttgtggccgtcccaaacatgtagctcggttggt |
54980257 |
T |
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| Q |
116 |
gacgaagagatcgatagttcaaagttcaaaccttgttaactaacataatcactaatttactaacatttgctgataaaaacaaattttagaactataagaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54980256 |
gacgaagagatcgatagttcaaagttcaaaccttgttaactaacataatcactaatttactaacatttgctgataaaaacaaattttagaattataagaa |
54980157 |
T |
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| Q |
216 |
gtttaagtctgcagttcaatccctgata---actaacataaccaccaataactaatatacaaatttacatactgatga |
290 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54980156 |
gtttaagtctgcagttcaatccctgataactactaacataaccaccaataactaatatacaaatttacatactgatga |
54980079 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 2377505 - 2377458
Alignment:
| Q |
18 |
aagtaccttatatcttctccaagaacagaagctttatccatttgtatg |
65 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
2377505 |
aagtaccttatagcttctccaagaacagaagctttgtccatctgtatg |
2377458 |
T |
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