View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5265_high_43 (Length: 297)

Name: NF5265_high_43
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5265_high_43
NF5265_high_43
[»] chr6 (12 HSPs)
chr6 (17-292)||(26800982-26801257)
chr6 (17-256)||(27614115-27614366)
chr6 (137-261)||(27707397-27707517)
chr6 (144-261)||(27692588-27692701)
chr6 (17-96)||(27692442-27692521)
chr6 (17-96)||(27707197-27707276)
chr6 (17-96)||(27594606-27594684)
chr6 (22-96)||(27533183-27533257)
chr6 (142-220)||(27726274-27726352)
chr6 (142-220)||(27533322-27533400)
chr6 (233-261)||(27533398-27533426)
chr6 (233-261)||(27726350-27726378)
[»] scaffold0349 (2 HSPs)
scaffold0349 (142-220)||(4853-4931)
scaffold0349 (233-261)||(4929-4957)


Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 26801257 - 26800982
Alignment:
Q  17 caaatgacatattatttgaatctcgcatttgctttaagttgtgctttcaacagtagtagtatcgactggacctggattccatacatttaaagtccacagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26801257 caaatgacatattatttgaatctcgcatttgctttaagttgtgctttcaacagtagtagtatcgactggacctggattccatacatttaaagtccacagt 26801158  T
Q  117 tttacgcagttgttaatctctgataggatggttcagattacagattcactaatttagtttccatccatctcagctatggatttaaatcggatggactaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26801157 tttacgcagttgttaatctctgataggatggttcagattacagattcactaatttagtttccatccatctcagctatggatttaaatcggatggactaga 26801058  T
Q  217 ttggtgctgttatttctgggaatccatttccatatcaactccatgcaaacaactaaaatatggactaagaattatc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26801057 ttggtgctgttatttctgggaatccatttccatatcaactccatgcaaacaactaaaatatggactaagaattatc 26800982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 27614115 - 27614366
Alignment:
Q  17 caaatgacatattatttgaatctcgcatttgctttaagttgtgctttcaacagtagtagtatcgactggacctggattccatacat---ttaaagtccac 113  Q
    |||||||||| ||| |||| |||| |||||||||||| |||||||| ||||| ||||||||||  | ||||| ||||||| | |||   | ||||||||     
T  27614115 caaatgacatgttaattgagtctcacatttgctttaacttgtgcttccaacactagtagtatccgcaggacccggattccgtgcattaataaaagtccat 27614214  T
Q  114 agttttacgcagttgttaatctc---------tgataggatggttcagattacagattcactaatttagtttccatccatctcagctatggatttaaatc 204  Q
    ||||  | |||||||||||||||         |||| ||| |||||| |||||| || ||||||||| |||| || ||||||||| | | |||||||||     
T  27614215 agttccatgcagttgttaatctcaggcatttgtgatcggaaggttcaaattacatatacactaatttggtttacaaccatctcagttgtagatttaaata 27614314  T
Q  205 ggatggactagattggtgctgttatttctgggaatccatttccatatcaact 256  Q
      |  ||||||| ||||||  ||| |  ||||||||||||||||||||||||    
T  27614315 aaacagactagactggtgcaattactagtgggaatccatttccatatcaact 27614366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 261
Target Start/End: Original strand, 27707397 - 27707517
Alignment:
Q  137 tgataggatggttcagattacagattcactaatttagtttccatccatctcagctatggatttaaatcggatggactagattggtgctgttatttctggg 236  Q
    |||| |||||||||||||||||||| ||||||||  |||| || |||||||| |  |  ||||||||| ||    ||| |||||||| |||| | |||||    
T  27707397 tgatcggatggttcagattacagatacactaattcggttttcaaccatctcaaccgtatatttaaatcaga----ctaaattggtgcagttactactggg 27707492  T
Q  237 aatccatttccatatcaactccatg 261  Q
    |||||||||||||||||||||||||    
T  27707493 aatccatttccatatcaactccatg 27707517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 27692588 - 27692701
Alignment:
Q  144 atggttcagattacagattcactaatttagtttccatccatctcagctatggatttaaatcggatggactagattggtgctgttatttctgggaatccat 243  Q
    |||||||||||||||||| ||| ||||  |||| || |||||||| |  | ||||||||||     ||||| |||||||| |||| | ||||||||||||    
T  27692588 atggttcagattacagatacacgaattcggttttcaaccatctcaaccgtagatttaaatc----agactaaattggtgcagttactactgggaatccat 27692683  T
Q  244 ttccatatcaactccatg 261  Q
    ||||||||||||||||||    
T  27692684 ttccatatcaactccatg 27692701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 27692442 - 27692521
Alignment:
Q  17 caaatgacatattatttgaatctcgcatttgctttaagttgtgctttcaacagtagtagtatcgactggacctggattcc 96  Q
    |||||||||| ||| |||| |||| |||||| ||||| |||||||| |||||||||||||||| || ||||| |||||||    
T  27692442 caaatgacatgttaattgagtctcacatttgatttaacttgtgcttccaacagtagtagtatcaacaggacccggattcc 27692521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 27707197 - 27707276
Alignment:
Q  17 caaatgacatattatttgaatctcgcatttgctttaagttgtgctttcaacagtagtagtatcgactggacctggattcc 96  Q
    |||||||||| ||| |||| |||| |||||| ||||| |||||||| |||||||||||||||| || ||||| |||||||    
T  27707197 caaatgacatgttaattgagtctcacatttgatttaacttgtgcttccaacagtagtagtatcaacaggacccggattcc 27707276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 27594606 - 27594684
Alignment:
Q  17 caaatgacatattatttgaatctcgcatttgctttaagttgtgctttcaacagtagtagtatcgactggacctggattcc 96  Q
    |||||||||| ||| |||| |||| |||||||||||| || ||||| |||||||||||||||| || ||||| |||||||    
T  27594606 caaatgacatgttaattgagtctcacatttgctttaactt-tgcttccaacagtagtagtatcaacaggacccggattcc 27594684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 27533183 - 27533257
Alignment:
Q  22 gacatattatttgaatctcgcatttgctttaagttgtgctttcaacagtagtagtatcgactggacctggattcc 96  Q
    ||||| ||| |||| |||| |||||| ||||| |||||||| |||||||||||||||| || ||||| |||||||    
T  27533183 gacatgttaattgagtctcacatttgatttaacttgtgcttccaacagtagtagtatcaacgggacccggattcc 27533257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 27726274 - 27726352
Alignment:
Q  142 ggatggttcagattacagattcactaatttagtttccatccatctcagctatggatttaaatcggatggactagattgg 220  Q
    |||||||||||||||||||| ||||||||  |||| || |||||||| | || |||||||||| ||  |||||||||||    
T  27726274 ggatggttcagattacagatacactaattcggttttcaaccatctcaaccatagatttaaatcagacagactagattgg 27726352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 27533322 - 27533400
Alignment:
Q  142 ggatggttcagattacagattcactaatttagtttccatccatctcagctatggatttaaatcggatggactagattgg 220  Q
    |||||||||||||||||||| ||||||||  |||| || |||||||| |  | |||||||||| ||  |||||||||||    
T  27533322 ggatggttcagattacagatacactaattcggttttcaaccatctcaaccgtagatttaaatcagacagactagattgg 27533400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 27533398 - 27533426
Alignment:
Q  233 tgggaatccatttccatatcaactccatg 261  Q
    |||||||||||||||||||||||||||||    
T  27533398 tgggaatccatttccatatcaactccatg 27533426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 27726350 - 27726378
Alignment:
Q  233 tgggaatccatttccatatcaactccatg 261  Q
    |||||||||||||||||||||||||||||    
T  27726350 tgggaatccatttccatatcaactccatg 27726378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 4853 - 4931
Alignment:
Q  142 ggatggttcagattacagattcactaatttagtttccatccatctcagctatggatttaaatcggatggactagattgg 220  Q
    |||||||||||||||||||| ||||||||  |||| || |||||||| | || |||||||||| ||  |||||||||||    
T  4853 ggatggttcagattacagatacactaattcggttttcaaccatctcaaccatagatttaaatcagacagactagattgg 4931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 4929 - 4957
Alignment:
Q  233 tgggaatccatttccatatcaactccatg 261  Q
    |||||||||||||||||||||||||||||    
T  4929 tgggaatccatttccatatcaactccatg 4957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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