View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_high_5 (Length: 562)
Name: NF5265_high_5
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 52972162 - 52971632
Alignment:
| Q |
18 |
actacaaaaggtgatttgttaggctccccatctaaattttgatcccttgttttatcattgttttcttcgttttgaatatctgcagtggatgtggatgtac |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52972162 |
actacaaaaggtgatttgttaggctctccatctaaattttgatcccttgttttatcgttgttttcttcgttttgaatatctgcggtggatgtggatgtac |
52972063 |
T |
|
| Q |
118 |
ccttattattattattactatcatcaacataatggtgtcctatagtagcaagataatcatctgaacaatattggtaaaacacttgctccaacgtcacttt |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52972062 |
ccttattattatta---ctatcatcaacataatggtgtcctatagtagcaagataatcatctgaacaatattggtaaaacacttgctccaacgtcacttt |
52971966 |
T |
|
| Q |
218 |
gtattcacatgcatatttaagataattcatgacataacgagtcaatggatgaaccgctccatatgggacgggaatcctttcattatcacccttgatggag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971965 |
gtattcacatgcatatttaagataattcatgacataacgagtcaatggatgaaccgctccatatgggacgggaatcctttcattatcacccttgatggag |
52971866 |
T |
|
| Q |
318 |
ttttccaaatcataaaacatcgaaacgacagcctttattattccatgctttgtcatagtcatctcgtatgccaaatccttggcacattgctctaagccat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52971865 |
ttttccaaatcataaaacatcgaaacgacagcctttattattccatgctttgtcatagtcatctcgtatgccaaatccttggcacattgctctaaaccat |
52971766 |
T |
|
| Q |
418 |
catcattaatgagtgtaatgacaggttccacgtcatccctcaaggtctcatacatatctaggaatttgaacaatttctctgatgatggcttggttaaaac |
517 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971765 |
caccattaatgagtgtaatgacaggttccacgtcatccctcaaggtctcatacatatctaggaatttgaacaatttctctgatgatggcttggttaaaac |
52971666 |
T |
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| Q |
518 |
cactgcttgagcaaaattgagaaaattgatgatg |
551 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52971665 |
cactgcttgagcaaaattgagaaaattgatgatg |
52971632 |
T |
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