View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_high_6 (Length: 536)
Name: NF5265_high_6
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 20 - 526
Target Start/End: Original strand, 40224138 - 40224644
Alignment:
| Q |
20 |
atttttatcatcaaaatctaatctaatatactactaataaaaagagtaaacattgaacatagaaaaatatagtaatggttttgatcttcaaatgacacac |
119 |
Q |
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| T |
40224138 |
atttttatcatcaaaatctaatctaatatactactaataaaaagagtaaacattgaacatagaaaaatatagtaatggttttgatcttcaaatgacacac |
40224237 |
T |
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| Q |
120 |
tattggcaacacaacaaaatgtagtaaaatacatcacaaaacttaacatttgccttttcatattcactatccctctaagaaagaccactattctatgaaa |
219 |
Q |
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| T |
40224238 |
tattggcaacacaacaaaatgtagtaaaatacatcacaaaacttaacatttgccttttcatattcactatccctctaagaaagaccactattctatgaaa |
40224337 |
T |
|
| Q |
220 |
ttcatttgtcaactgcattctcctttctcaatagaagtttcttttgtatgtttttgtttacccacttgtacatgcctcattgctaaaacttcaagagctg |
319 |
Q |
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| T |
40224338 |
ttcatttgtcaactgcattctcctttctcaatagaagtttcttttgtatgtttttgtttacccacttgtacatgcctcattgctaaaacttcaagagctg |
40224437 |
T |
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| Q |
320 |
taactacatcaccaatcaaaggtcgagcattagcatcctccaatagacacattgctgcaattgctagtgcttggaatagacccctcattggatagttccc |
419 |
Q |
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| T |
40224438 |
taactacatcaccaatcaaaggtcgagcattagcatcctccaatagacacattgctgcaattgctagtgcttggaatagacccctcattggatagttccc |
40224537 |
T |
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| Q |
420 |
ttttagcaatggatcaaccattgatgtatattttcttttgtttttgagtagtggtagtgcctgaaaacaaaaaatgttatgaatgtcaatgactcgtgac |
519 |
Q |
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| T |
40224538 |
ttttagcaatggatcaaccattgatgtatattttcttttgtttttgagtagtggtagtgcctgaaaacaaaaaatgttatgaatgtcaatgactcgtgac |
40224637 |
T |
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| Q |
520 |
gtctgtg |
526 |
Q |
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| T |
40224638 |
gtctgtg |
40224644 |
T |
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