View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_high_66 (Length: 250)
Name: NF5265_high_66
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_66 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 38278916 - 38279154
Alignment:
| Q |
1 |
aggctaaaaagaagttatatgacccaactaaagaaattgccaacaagcatttagaattggatatttcatatcccaaatttaactgattctagggttaagt |
100 |
Q |
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| T |
38278916 |
aggctaaaaagaagttatatgacccaactaaagaaattgccaacaagcatttagaattggatatttcatatcccaaatttaactgattctagggttaagt |
38279015 |
T |
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| Q |
101 |
tgaagacggcttcttctcgcatcaactcttctgatgaatgtgacaatgttgttaaagtatacaat-aattcttactaaatattcaaagttacctgtgcag |
199 |
Q |
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| T |
38279016 |
cgaagacggcttcttctcgcatcaactcttctgatgaatgtgacaatgttgttaaagtatacaataaattcttactaaatattcaaagttacctgtgcag |
38279115 |
T |
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| Q |
200 |
nnnnnnncagacaaactcattccattcaccaagtagtcat |
239 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
38279116 |
-ttttttcagacaaactcattccattcaccaagtattcat |
38279154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 38274788 - 38274963
Alignment:
| Q |
3 |
gctaaaaagaagttatatgacccaactaaagaaattgccaacaagcatttagaattggatatttcatatcccaaatttaactgattctagggttaagttg |
102 |
Q |
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|||| ||||||||||||||| | |||||| |||||||| ||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||| | |
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| T |
38274788 |
gctataaagaagttatatgagctaactaatgaaattgcaaacaagcatttagaattggctatttcacatgtcaaatttaactgattctaggattaagtcg |
38274887 |
T |
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| Q |
103 |
aagacggcttcttctcgcatcaactcttctgatgaatgtgacaatgttgttaaagtatacaat-aattcttactaaa |
178 |
Q |
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| T |
38274888 |
aaga-ggcttcttctcgcatcaattcttcttatgaatgtgatgatgttgttaaggtatacaataaattcttactaaa |
38274963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 38271029 - 38271210
Alignment:
| Q |
1 |
aggctaaaaagaagttatatgacccaactaaagaaattgccaacaagcatttagaattggatatttcatatcccaaatttaactgattctagggttaagt |
100 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||| | |
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| T |
38271029 |
aggctaagaagaagttacatgacccaactaaagaaattgccaacaagcatttagaattggctatttcacatctcaaatttaactgattctaaagttaaat |
38271128 |
T |
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| Q |
101 |
tgaagacggcttcttctcgcatcaact----cttctgatgaatgtgacaatgttgttaaagtatacaat-aattcttactaa |
177 |
Q |
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|||||||| ||||||||||| ||| | ||| ||||||||||| ||||| |||| ||||||||| |||||||||||| |
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| T |
38271129 |
cgaagacggtttcttctcgcaccaatttcacattcagatgaatgtgatgatgtttttaaggtatacaataaattcttactaa |
38271210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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