View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_high_7 (Length: 533)
Name: NF5265_high_7
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 13975982 - 13976495
Alignment:
| Q |
1 |
caaattcaaattatgcaaaaacaacaagatacttctattcctttaccatgactttcctcttcgcctattgatgttgagacaatattggtgcatgtgtttg |
100 |
Q |
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| T |
13975982 |
caaattcaaattatgcaaaaacaacaagatacttctattccttcaccatgactttcctcttcgcctattgatgttgagacaatattggtgcatgtgttcg |
13976081 |
T |
|
| Q |
101 |
gcgaaaactgatagtgaat-agtcattgttcttgatctcgtgcaagagcggctggctatggaagatactgaaaaaagtaaagatcgctcattctcatgag |
199 |
Q |
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| T |
13976082 |
actaaaactgatagtggatgagtcattgttcttgatctcgtgcaagagcggccggctatggaagatacttaaaaaagtaaagatcgctcattctcatgag |
13976181 |
T |
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| Q |
200 |
tgtagttttggtgggttcattgtgcccaatacttccatctctgatcaacaacataatacatttcctatcatattggttcttgaagcgataaagtgacaca |
299 |
Q |
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| T |
13976182 |
tgtagttttggtgggttcattgtgcccaatacttccatctctgatcaacaacataatacatttcctatcatattggttcttgaagggatgaagtgacaca |
13976281 |
T |
|
| Q |
300 |
taacataatgactatattcgaggatataggaatgaaattcttacataatatgaaaagnnnnnnnnnnnngtttgtctttttctcttcaattggattaggt |
399 |
Q |
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| T |
13976282 |
taacataatgactatattcgaggatataggaatgaaattcttacataatatgaaaag--ctttttttttgtttgtctttttc-cttcaattggattaggt |
13976378 |
T |
|
| Q |
400 |
ttatgtctcctcaatttatttttcataaatgaatttctatcagat-nnnnnnnnnttacttatatcgttttgtgctatcataacaaatatatatctcaga |
498 |
Q |
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| T |
13976379 |
ttatgtctcctcaatttatttttcataaatgaatttctatcagataaaaaaaatattacttatatcgttttgtgctatcataacaaatatatatctcaga |
13976478 |
T |
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| Q |
499 |
tgcatttgcctaggttt |
515 |
Q |
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| T |
13976479 |
tgcatttgcctaggttt |
13976495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 37925368 - 37925426
Alignment:
| Q |
14 |
tgcaaaaacaacaagatacttctattcctttaccatgactttcctcttcgcctattgat |
72 |
Q |
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| T |
37925368 |
tgcaaaaacaacaagatacttctattccttcaacagggctttcttcttcgtctattgat |
37925426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 250316 - 250349
Alignment:
| Q |
309 |
gactatattcgaggatataggaatgaaattctta |
342 |
Q |
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| T |
250316 |
gactatattcgagcatataggaatgaaattctta |
250349 |
T |
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