View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_high_73 (Length: 239)
Name: NF5265_high_73
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_73 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 22703133 - 22702907
Alignment:
| Q |
17 |
acttacaccatgttaagggaaactctccgtcaagttca---aatagacaaaaataaaattggacagcccatgagttannnnnnngttcgtttcttgtata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22703133 |
acttacaccatgttaagggaaactctccgtcaagttcatcaaaaagacaaaaataaaattggacagcccatgagtactctttttgttcgtttcttgtata |
22703034 |
T |
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| Q |
114 |
ttctctctgtccacgaggttatgttgtcagaaacacctatataattaggaaaaa-gattcgtctcacatgaaaatcatgtgaccaaaccattgattgttg |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22703033 |
ttctctctgtccacgaggttatgttgtctgaaacacctatataattaggaaaaaagattcgtctcacatgaaaatcatgtgaccaaaccattgattgttg |
22702934 |
T |
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| Q |
213 |
atataataggaaagaataaataaatgc |
239 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
22702933 |
atataataggaaagaaaaaataaatgc |
22702907 |
T |
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