View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5265_high_75 (Length: 238)
Name: NF5265_high_75
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_75 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 40663964 - 40664091
Alignment:
| Q |
1 |
aaaaaaccatctgtgcagaagcacaaacatgttaggtcaatcatacagcctcgaaatctcagcagttagataaagatcataccactcttattttaacttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40663964 |
aaaaaaccatctgtgcagaagcacaaacatgttaggtcaatcatacagcctcgaaatctcagcagttagataaagatcataccactcttattctaacttc |
40664063 |
T |
|
| Q |
101 |
accaaatcaacttccatgcaaatataat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
40664064 |
accaaatcaacttccatgcaaatataat |
40664091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 40664257 - 40664334
Alignment:
| Q |
147 |
acaccttgtgacacttttgttccttgttttgccatatatggataaacagcttaattaaatgcacttaccatataagtg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40664257 |
acaccttgtgacacttttgttccttgttttgccatatatggataaacagcttaattaaatgcacttaccatataagtg |
40664334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University