View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_high_86 (Length: 213)
Name: NF5265_high_86
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_high_86 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 9278644 - 9278432
Alignment:
| Q |
1 |
ccctatgatctcaattgttttaccattatcgttctccctcatttcaccctaaattccttcgcaattatctcgctttgattcattttgtttaattgtttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9278644 |
ccctatgatctcaattgttttaccattatcgttctccctcatttcaccctaaattccttcgcaattatctcgctttgattcattttgtttaattgtttga |
9278545 |
T |
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| Q |
101 |
tgatgatttcattgaagtgtttactgggtaaaggtattcgctggtaagctgctttttgtttgcaaataaacttgtttgatgacggttatctaatactagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9278544 |
tgatgatttcattgaagtgtttactgggtaaaggtattcgctggtaagctgctttttgttcgcaaataaacttgtttgatgacggttatctaatactagt |
9278445 |
T |
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| Q |
201 |
aagagtagtagtg |
213 |
Q |
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||||||||||||| |
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| T |
9278444 |
aagagtagtagtg |
9278432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 9275266 - 9275062
Alignment:
| Q |
1 |
ccctatgatctcaattgttttaccattatcgttctccctcatttcaccctaaattccttcgcaattatctcgctttgattcattttgtttaattgtttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||| ||| |||| |||||||||||||||||||||| ||||| |
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| T |
9275266 |
ccctatgatctcaattgttttaccattattgttctccatcatttcactctaaattctttcgcgattttctcactttgattcattttgtttaattttttga |
9275167 |
T |
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| Q |
101 |
tgatgatttcattgaagtgtttactgggt-aaaggtattcgctggtaagctgctttttgtttgcaaataaacttgtttgatgacggttatctaa-tacta |
198 |
Q |
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||||||||||| || ||||||||||| || ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| | |||||||| ||||| |
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| T |
9275166 |
tgatgatttcaatggagtgtttactgtgtcaaaggtatttgctggtatgctgcattttgtttgcaaataaacttgtttgatgatgattatctaattacta |
9275067 |
T |
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| Q |
199 |
gtaag |
203 |
Q |
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||||| |
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| T |
9275066 |
gtaag |
9275062 |
T |
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