View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_1 (Length: 635)
Name: NF5265_low_1
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_1 |
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| [»] scaffold0043 (1 HSPs) |
| | |
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| [»] scaffold0555 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 21 - 586
Target Start/End: Complemental strand, 9700975 - 9700410
Alignment:
| Q |
21 |
atgtgttgttggccgcccttgtgagtcttaaagtataaaaatattgataatcgaattgttttcaaactttagtgtttttgaaatttttcggagcagtgaa |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
9700975 |
atgtgttgttggtcgcccttgtgagtcttaaagtataacaatattgataatcgaattgttttcaaactttagagtttttgaaattttttggagcagtgag |
9700876 |
T |
|
| Q |
121 |
ttttattttgtatctatgatctagacgagtagataagttgattcaatatctattannnnnnnngaaaaatgttgcctagacgataaggagttttcgtctt |
220 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
9700875 |
ttttattttgtatcgatgatctagacgagtagataagttgattcgatacctattatttttttcgaaaaatgttgcctagacgataaggagttttcgtctt |
9700776 |
T |
|
| Q |
221 |
tttaaaatgttaaaactattgaaatgagttgattcaatatatatctttgaacattgtaggggcatttacataatttacaaaagttaaaatattgaaatga |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9700775 |
tttaaaatgttaaaactattgaaatgagttgattcaatatgtatttttgaatattgtaggggcatttacataatttacaaaagttaaaatattgaaatga |
9700676 |
T |
|
| Q |
321 |
gttgaccaataaatttgcctcgtccatatgttcaaaatggccttatggttcgcaatgtttctgacgacaaatgaatttattgtcaaattctaaaaataaa |
420 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9700675 |
gttgaccaatgaatttgcctcgtccatatgttcaaaatggccttatggttcgcaatgtttctgacgacaaatgaatttattgtcaaattctaaaaataaa |
9700576 |
T |
|
| Q |
421 |
tagagtttgagctggtgtttcacgattatttttggactttttggttatggtacacttcatcgtcacgtaagtatttggcacgcgtcattatgcgcttggt |
520 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9700575 |
tagagtttgagatgttgtttcacgattttttttggactttttggttatggtacacttcatcgtcacgtaagcatttggcacgcgtcattatgcgcttggt |
9700476 |
T |
|
| Q |
521 |
gcacaccaacacatgttgaacatgtgcatgcgcatgccctcactcgatcaactccaatctatgctc |
586 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
9700475 |
gcacaccaacacatgttgaacacgtgcatgcacacgccctcactcgatcaactccaatctatgctc |
9700410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 21 - 586
Target Start/End: Complemental strand, 13567214 - 13566649
Alignment:
| Q |
21 |
atgtgttgttggccgcccttgtgagtcttaaagtataaaaatattgataatcgaattgttttcaaactttagtgtttttgaaatttttcggagcagtgaa |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
13567214 |
atgtgttgttggtcgcccttgtgagtcttaaagtataacaatattgataatcgaattgttttcaaactttagagtttttgaaattttttggagcagtgag |
13567115 |
T |
|
| Q |
121 |
ttttattttgtatctatgatctagacgagtagataagttgattcaatatctattannnnnnnngaaaaatgttgcctagacgataaggagttttcgtctt |
220 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
13567114 |
ttttattttgtatcgatgatctagacgagtagataagttgattcgatacctattatttttttcgaaaaatgttgcctagacgataaggagttttcgtctt |
13567015 |
T |
|
| Q |
221 |
tttaaaatgttaaaactattgaaatgagttgattcaatatatatctttgaacattgtaggggcatttacataatttacaaaagttaaaatattgaaatga |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13567014 |
tttaaaatgttaaaactattgaaatgagttgattcaatatgtatttttgaatattgtaggggcatttacataatttacaaaagttaaaatattgaaatga |
13566915 |
T |
|
| Q |
321 |
gttgaccaataaatttgcctcgtccatatgttcaaaatggccttatggttcgcaatgtttctgacgacaaatgaatttattgtcaaattctaaaaataaa |
420 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13566914 |
gttgaccaatgaatttgcctcgtccatatgttcaaaatggccttatggttcgcaatgtttctgacgacaaatgaatttattgtcaaattctaaaaataaa |
13566815 |
T |
|
| Q |
421 |
tagagtttgagctggtgtttcacgattatttttggactttttggttatggtacacttcatcgtcacgtaagtatttggcacgcgtcattatgcgcttggt |
520 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13566814 |
tagagtttgagatgttgtttcacgattttttttggactttttggttatggtacacttcatcgtcacgtaagcatttggcacgcgtcattatgcgcttggt |
13566715 |
T |
|
| Q |
521 |
gcacaccaacacatgttgaacatgtgcatgcgcatgccctcactcgatcaactccaatctatgctc |
586 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
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| T |
13566714 |
gcacaccaacacatgttgaacacgtgcatgcacacgccctcactcgatcaactccaatctatgctc |
13566649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 588 - 625
Target Start/End: Original strand, 34543 - 34580
Alignment:
| Q |
588 |
tctgacaggtggctttgggagtccaacactgatgatgt |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
34543 |
tctgacaggtggctttgggagtccaacactgatgatgt |
34580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 588 - 625
Target Start/End: Original strand, 14844071 - 14844108
Alignment:
| Q |
588 |
tctgacaggtggctttgggagtccaacactgatgatgt |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
14844071 |
tctgacaggtggctttgggagtccaacactgatgatgt |
14844108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 588 - 625
Target Start/End: Complemental strand, 476419 - 476382
Alignment:
| Q |
588 |
tctgacaggtggctttgggagtccaacactgatgatgt |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
476419 |
tctgacaggtggctttgggagtccaacactgatgatgt |
476382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 588 - 625
Target Start/End: Original strand, 3545035 - 3545072
Alignment:
| Q |
588 |
tctgacaggtggctttgggagtccaacactgatgatgt |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3545035 |
tctgacaggtggctttgggagtccaacactgatgatgt |
3545072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 588 - 625
Target Start/End: Complemental strand, 31675136 - 31675099
Alignment:
| Q |
588 |
tctgacaggtggctttgggagtccaacactgatgatgt |
625 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31675136 |
tctgacaggtggctttgggagtccaacaatgatgatgt |
31675099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 588 - 625
Target Start/End: Original strand, 31921284 - 31921321
Alignment:
| Q |
588 |
tctgacaggtggctttgggagtccaacactgatgatgt |
625 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31921284 |
tctgacaggtggctttgggagtccaacaatgatgatgt |
31921321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 625
Target Start/End: Complemental strand, 7874 - 7837
Alignment:
| Q |
588 |
tctgacaggtggctttgggagtccaacactgatgatgt |
625 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
7874 |
tctgacaggtggctttgggagtccaacaataatgatgt |
7837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 625
Target Start/End: Complemental strand, 3939421 - 3939384
Alignment:
| Q |
588 |
tctgacaggtggctttgggagtccaacactgatgatgt |
625 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
3939421 |
tctgacaggtggctttgggattccaacaatgatgatgt |
3939384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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