View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_10 (Length: 468)
Name: NF5265_low_10
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Original strand, 30898245 - 30898681
Alignment:
| Q |
19 |
gttctcaagtctcaaaatccacaggaggaactgtttcaagtggagaagaaagtagtaagagaaggaaagtatcttcagcaaagcaagcggctcaaacctc |
118 |
Q |
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| T |
30898245 |
gttctcaagtctcaaaatccacaggaggaactgtttcaagtggagaagaaagtagtaagagaaggaaagtatcttcggcaaagcaagcggctcaaacctc |
30898344 |
T |
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| Q |
119 |
gtcatctggtgatgatattctaacagcaatgccatgtcttgtcacactgaatccaggggtaaagataacaagtgttgctgccggtgggcgtcatacccta |
218 |
Q |
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| T |
30898345 |
gtcatctggtgatgatattctaacagcaatgccatgtcttgtcacactgaatccaggggtaaagataacaagtgttgctgctggtgggcgtcatacccta |
30898444 |
T |
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| Q |
219 |
gtattgtcaggtattgactttatatggactatttattctcccgagcttaaaatttcatgtaatgtgaccatcttttgattgaagcatcacttttgtgcta |
318 |
Q |
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| T |
30898445 |
gtattgtcaggtattgaatttatatggactatttattctcccgagcttaaaatttcatgtaatgtgaccatcttttgattgaagcatcacttttgtgcta |
30898544 |
T |
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| Q |
319 |
tggaagatcagacatgcagtcttagacatgtcattaattgtagctttctgaatttttcagatataggacaggtgtggggttggggctatggaggtgaagg |
418 |
Q |
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| T |
30898545 |
tggaagatcagacatgcagtcttagacatgtcattaattgtagctttctgaatttttcagatataggacaggtgtggggttggggctatggaggtgaagg |
30898644 |
T |
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| Q |
419 |
gcagcttggtttgggctccagagtacggatgatgtcc |
455 |
Q |
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| T |
30898645 |
gcagcttggtttgggctccagagtacgtatggtgtcc |
30898681 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 433
Target Start/End: Original strand, 23117638 - 23117699
Alignment:
| Q |
372 |
ttttcagatataggacaggtgtggggttggggctatggaggtgaagggcagcttggtttggg |
433 |
Q |
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||||||||| | |||||||| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
23117638 |
ttttcagatgtgggacaggtctggggttggggctatggaggcgaaggacagctaggtttggg |
23117699 |
T |
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