View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_15 (Length: 420)
Name: NF5265_low_15
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 5698011 - 5697709
Alignment:
| Q |
18 |
agtatcccctgtacggtggtgctaatgtaatgattgtgggaatgaaataaccaaacatgttaaaagtaactatataatatgggaatgatttatttcccaa |
117 |
Q |
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| T |
5698011 |
agtatcccctgtacggtggtgctagtgtaatgattgtgggaatgaaataaccaaacatgttaaaagtaactatataatatgggaatgatttatttcccaa |
5697912 |
T |
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| Q |
118 |
caatatcaaggattaaggttgtgcttctaaatataaaacatggtacaattttgtccaatataaatcaaaaccactcatttccaattatcatctttcatta |
217 |
Q |
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| T |
5697911 |
caatatcaaggattaaggttgtgcttctaaatataaaacatggtacaattttgtccaatataaatccaaaccactcatttccaattatcatctttcatta |
5697812 |
T |
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| Q |
218 |
ttgacatggatgcatagtaacactatcattgtacaacataaatttaccactctttaataaaacatttggattatggttctaaattcttacatttccacac |
317 |
Q |
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| T |
5697811 |
ttcacatggatgcatagtaacactatcattgtacaacataaatttaccactctttaataaaacatttggattatggttctaaattcttacatttccacac |
5697712 |
T |
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| Q |
318 |
att |
320 |
Q |
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||| |
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| T |
5697711 |
att |
5697709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 148 - 414
Target Start/End: Complemental strand, 5686099 - 5685834
Alignment:
| Q |
148 |
atataaaacatggtacaattttgtccaatataaatcaaaaccactcatttccaattatcatctttcattattgacatggatgcatagtaacactatcatt |
247 |
Q |
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| T |
5686099 |
atataaaatatggtacaattttgtccaatataaatcaaaaccactcatttccaattatcatctttcattattcacatggatgcatagtagcactatcatt |
5686000 |
T |
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| Q |
248 |
gtacaacataaatttaccactctttaataaaacatttggattatggttctaaattcttacatttccacacatttctgcatttggtctttctcattaactt |
347 |
Q |
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| T |
5685999 |
gtacaacataa-tataccactctttaataaaacatttggattatggttctaaattcttacatttccacacatttctgcatttggtctttctcattaactt |
5685901 |
T |
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| Q |
348 |
ggcccagacatatagtcttcgctcttcagcaacttttgttcaagtattgaaataatattcatctcac |
414 |
Q |
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| T |
5685900 |
ggcccagacatatagtcttcactcttcagcaacttttgttcaagtattgaaataatattcatatcac |
5685834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 5686217 - 5686132
Alignment:
| Q |
50 |
attgtgggaatgaaataaccaaacatgttaaaagtaactatataatatgggaatgatttatttcccaacaatatcaaggattaaggttg |
138 |
Q |
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| T |
5686217 |
attgtgggaatgaaaggaccaaacatgttaaaagtaactatata---tgggtatgatttatttcccaacaatataaaggattaaggttg |
5686132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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