View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_22 (Length: 374)
Name: NF5265_low_22
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 47242717 - 47242354
Alignment:
| Q |
1 |
tattcttttatctggtcttgaatcaaattttgttcttgattgaattattttatttcannnnnnnnctttcttgtattgctttgtttctcatgtatgttgt |
100 |
Q |
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| T |
47242717 |
tattcttttatctggtcttgaatcaaattttgttcttgattgaataattttatttcatttttt---tttcttgtattgctttgtttctcatgtatgttgt |
47242621 |
T |
|
| Q |
101 |
ttgttgttaatataggttttgaagatggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatac |
200 |
Q |
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| T |
47242620 |
ttgttgttaatataggttttgaagatggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatac |
47242521 |
T |
|
| Q |
201 |
attttttattgtaaatttgaatatctaaagccttgttgaaatgaagttaattggactaattatgtttatttgcacttgctgtgattcatttcaggatttt |
300 |
Q |
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| T |
47242520 |
attttttattgtgaatttgaatatctaaagccttgttgaaatgaagttaattggactaattctgtttattttcacttgctgtgattcatttcaggagttt |
47242421 |
T |
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| Q |
301 |
tgttgggattgcttctgagaatcaaaaggtaatttgaattgttgttttattactagctgatgatgtc |
367 |
Q |
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| T |
47242420 |
tgttgggattgcttctgagaatcaaaaggtaatttgaattgttgttttattactagctggtgatgtc |
47242354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 125 - 355
Target Start/End: Complemental strand, 47249041 - 47248811
Alignment:
| Q |
125 |
atggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtaaatttgaatat |
224 |
Q |
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| T |
47249041 |
atggaagctgacatacttaagtccctaaactttgaaatgggcaaccctaatgtgataacatttcttaagtaaggacatttattactgtaaagttgaatat |
47248942 |
T |
|
| Q |
225 |
ctaaagccttgttgaaatgaagttaattggactaattatgtttatttgcacttgctgtgatt-catttcaggatttttgttgggattgcttctgagaatc |
323 |
Q |
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|||| ||||| ||||||||| |||||||||| | |||||||| |||| || | || || | |||||||| ||| |||||||||||| |||||||| |
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| T |
47248941 |
ataaatccttgctgaaatgaa-ataattggactgaccatgtttatgtgcaactgttatgtttccctttcaggaggtttattgggattgcttgtgagaatc |
47248843 |
T |
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| Q |
324 |
aaaaggtaatttgaattgttgttttattacta |
355 |
Q |
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| T |
47248842 |
gaaaggttagttgaaatattgttttattacta |
47248811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 288
Target Start/End: Complemental strand, 47253871 - 47253696
Alignment:
| Q |
113 |
taggttttgaagatggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgt |
212 |
Q |
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|||||| | |||||||||||||| || || || | |||| |||||||||||||||||| |||| | ||| ||||| |||||| || || |||||| |
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| T |
47253871 |
taggttattaagatggaagctgatattcttaagtcattgaattttgaaatgggcaaccctcatgttaacacttttctcaagtaaggactgttaatattgt |
47253772 |
T |
|
| Q |
213 |
aaatttgaatatctaaagccttgttgaaatgaagttaattggactaattatgtttatttgcacttgctgtgattca |
288 |
Q |
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||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||| |||| || ||||| |||| |
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| T |
47253771 |
taatttcaatatctaaagcctaattgaaatgaagttaattggattaattgtgtttatgtgcaattactgtgtttca |
47253696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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