View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5265_low_25 (Length: 354)

Name: NF5265_low_25
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5265_low_25
NF5265_low_25
[»] chr6 (4 HSPs)
chr6 (40-349)||(13096115-13096425)
chr6 (281-321)||(9953319-9953359)
chr6 (281-321)||(23379490-23379530)
chr6 (281-321)||(23388829-23388869)
[»] scaffold0360 (2 HSPs)
scaffold0360 (40-176)||(1983-2118)
scaffold0360 (40-77)||(5911-5948)
[»] chr5 (3 HSPs)
chr5 (40-176)||(28441602-28441736)
chr5 (232-349)||(1810981-1811098)
chr5 (47-168)||(2452850-2452969)
[»] chr4 (3 HSPs)
chr4 (40-176)||(5680950-5681083)
chr4 (47-176)||(10385468-10385595)
chr4 (281-321)||(5680745-5680785)
[»] chr3 (2 HSPs)
chr3 (40-176)||(16185078-16185212)
chr3 (281-321)||(538320-538360)
[»] chr7 (1 HSPs)
chr7 (48-176)||(10431831-10431951)
[»] chr8 (1 HSPs)
chr8 (286-322)||(23612895-23612931)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 40 - 349
Target Start/End: Original strand, 13096115 - 13096425
Alignment:
Q  40 taaaccgatagagttccgtcgttgccggtgttgctcttgaatctaattcaattggtgttgttgttctctatttccatgtgcttctcctcttctctagtga 139  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  13096115 taaaccgatagagtttcgtcgttgtcggtgttgctcttcaatctaattcaattggtgttgttgttctctatttccatgtgcttctcctcttctctcaaga 13096214  T
Q  140 agcgtgcggctccttttctttcctttccaaattgtgagtgactgtatgccgaacgaccccttttggttgctagcct-ttgnnnnnnnnnnnnncttgtga 238  Q
     ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||             ||||| |    
T  13096215 tgcgtgcggctccttttctttcatttccaaatcgtgagtgactgtatgccgaacgaccccttttggttgctagcctcttgtatgtatatatatcttgtta 13096314  T
Q  239 cctagttgttttcttttacaaaaagcatgttacgnnnnnnnnctcttgggtcaacatcatgaagttttgttcaaagcccaattaattatactaatgcgcc 338  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  13096315 cctagttgttttcttttacaaaaagcatgttacgttttttttctcttgggtcaacatcatgaagttttgttcaaagcccaattaatactactaatgcgcc 13096414  T
Q  339 cctatgctact 349  Q
    || ||||||||    
T  13096415 cccatgctact 13096425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 9953359 - 9953319
Alignment:
Q  281 ctcttgggtcaacatcatgaagttttgttcaaagcccaatt 321  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  9953359 ctcttgggtcaacatcatgaatttttggtcaaagcccaatt 9953319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 23379490 - 23379530
Alignment:
Q  281 ctcttgggtcaacatcatgaagttttgttcaaagcccaatt 321  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  23379490 ctcttgggtcaacatcatgaatttttggtcaaagcccaatt 23379530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 23388829 - 23388869
Alignment:
Q  281 ctcttgggtcaacatcatgaagttttgttcaaagcccaatt 321  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  23388829 ctcttgggtcaacatcatgaatttttggtcaaagcccaatt 23388869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 2118 - 1983
Alignment:
Q  40 taaaccgatagagttccgtcgttgccggtgttgctcttgaatctaattcaattggtgttgttgttctctatttccatgtgcttctcctcttctctagtga 139  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||| ||||    
T  2118 taaaccgatagagttccgtcgttgccgatgttgctcttcaatctaatttaatcgatgttgttgctctctatttccatgtgcttctcc-cttctctcgtga 2020  T
Q  140 agcgtgcggctccttttctttcctttccaaattgtga 176  Q
     ||||||||||||||||||||  ||||||||||||||    
T  2019 tgcgtgcggctccttttctttattttccaaattgtga 1983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 5948 - 5911
Alignment:
Q  40 taaaccgatagagttccgtcgttgccggtgttgctctt 77  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  5948 taaaccgatagagttccgtcgttgccgatgttgctctt 5911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 28441602 - 28441736
Alignment:
Q  40 taaaccgatagagttccgtcgttgccggtgttgctcttgaatctaattcaattggtgttgttgttctctatttccatgtgcttctcctcttctctagtga 139  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||  ||||| ||||||||||||||||||||||| ||||||| ||||    
T  28441602 taaaccgatagagttccgtcgttgccggtgttgctcttcaatctaattcaatcggtactgttgctctctatttccatgtgcttctcc-cttctctcgtga 28441700  T
Q  140 agcgtgcggctccttttctttcctttccaaattgtga 176  Q
     ||||||||| ||||||||||| ||||||||||||||    
T  28441701 tgcgtgcggc-ccttttctttcttttccaaattgtga 28441736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 349
Target Start/End: Original strand, 1810981 - 1811098
Alignment:
Q  232 cttgtgacctagttgttttcttttacaaaaagcatgttacgnnnnnnnnctcttgggtcaacatcatgaagttttgttcaaagcccaattaattatacta 331  Q
    |||||||||||||||||||||||| | | |||||||||||         ||||||||||||||||||||||||||| ||||||||||||||||| ||||     
T  1810981 cttgtgacctagttgttttcttttgctacaagcatgttactttttttttctcttgggtcaacatcatgaagttttggtcaaagcccaattaattctactc 1811080  T
Q  332 atgcgcccctatgctact 349  Q
    ||||||||| ||||||||    
T  1811081 atgcgcccccatgctact 1811098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 2452969 - 2452850
Alignment:
Q  47 atagagttccgtcgttgccggtgttgctcttgaatctaattcaattggtgttgttgttctctatttccatgtgcttctcctcttctctagtgaagcgtgc 146  Q
    |||||||||||||||||||||||||||| || |||||||||||||  ||||||||| ||||||||||||||||||||||| |||||||   |  ||||||    
T  2452969 atagagttccgtcgttgccggtgttgctattcaatctaattcaatcagtgttgttgctctctatttccatgtgcttctcc-cttctct-ccggtgcgtgc 2452872  T
Q  147 ggctccttttctttcctttcca 168  Q
    ||||| ||||||||| ||||||    
T  2452871 ggctctttttctttcttttcca 2452850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 5681083 - 5680950
Alignment:
Q  40 taaaccgatagagttccgtcgttgccggtgttgctcttgaatctaattcaattggtgttgttgttctctatttccatgtgcttctcctcttctctagtga 139  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||||| ||||||||||||||||||  ||| ||||||| ||||    
T  5681083 taaaccgatagagttccgtcgttgccagtgttactcttcaatctaattcaatcggtgttgttgctctctatttccatgtgct--tccccttctctcgtga 5680986  T
Q  140 agcgtgcggctccttttctttcctttccaaattgtga 176  Q
     ||||||||| ||||||||||| ||||||||| ||||    
T  5680985 tgcgtgcggc-ccttttctttcttttccaaatcgtga 5680950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 10385595 - 10385468
Alignment:
Q  47 atagagttccgtcgttgccggtgttgctcttgaatctaattcaattggtgttgttgttctctatttccatgtgcttctcctcttctctagtgaagcgtgc 146  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||  ||  ||||||    
T  10385595 atagagttccgtcgttgccggtgttgctcttcaatctaattcaatcggtgttgttgctctctatttccatgtgcttctcc-cttctct-ctggtgcgtgc 10385498  T
Q  147 ggctccttttctttcctttccaaattgtga 176  Q
    || || ||||||||| ||||||||| ||||    
T  10385497 ggttctttttctttcttttccaaatcgtga 10385468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 5680785 - 5680745
Alignment:
Q  281 ctcttgggtcaacatcatgaagttttgttcaaagcccaatt 321  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  5680785 ctcttgggtcaacatcatgaatttttggtcaaagcccaatt 5680745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 16185078 - 16185212
Alignment:
Q  40 taaaccgatagagttccgtcgttgccggtgttgctcttgaatctaattcaattggtgttgttgttctctatttccatgtgcttctcctcttctctagtga 139  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||  | ||| ||||||||||||||||||||||| ||||||| ||||    
T  16185078 taaatcgatagagttctgtcgttgccggtgttgctcttcaatctaattcaatcggtactcttgctctctatttccatgtgcttctcc-cttctctcgtga 16185176  T
Q  140 agcgtgcggctccttttctttcctttccaaattgtga 176  Q
     ||||||||| ||||||||||| ||||||||| ||||    
T  16185177 tgcgtgcggc-ccttttctttcttttccaaatcgtga 16185212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 538360 - 538320
Alignment:
Q  281 ctcttgggtcaacatcatgaagttttgttcaaagcccaatt 321  Q
    ||||||||||||||||| ||| ||||| |||||||||||||    
T  538360 ctcttgggtcaacatcaagaatttttggtcaaagcccaatt 538320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 48 - 176
Target Start/End: Complemental strand, 10431951 - 10431831
Alignment:
Q  48 tagagttccgtcgttgccggtgttgctcttgaatctaattcaattggtgttgttgttctctatttccatgtgcttctcctcttctctagtgaagcgtgcg 147  Q
    ||||||||||||||||||| |||||||||| ||||||      | |||  ||||| ||||||||||||||||||||||| ||||||| |||| |||||||    
T  10431951 tagagttccgtcgttgccgatgttgctcttcaatcta------tcggtactgttgctctctatttccatgtgcttctcc-cttctctcgtgatgcgtgcg 10431859  T
Q  148 gctccttttctttcctttccaaattgtga 176  Q
    || ||||||||||| ||||||||||||||    
T  10431858 gc-ccttttctttcttttccaaattgtga 10431831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 23612931 - 23612895
Alignment:
Q  286 gggtcaacatcatgaagttttgttcaaagcccaatta 322  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  23612931 gggtcaacatcatgaatttttggtcaaagcccaatta 23612895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University