View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_32 (Length: 329)
Name: NF5265_low_32
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 82 - 309
Target Start/End: Complemental strand, 25276422 - 25276195
Alignment:
| Q |
82 |
tgttgaacttaagataccgatacattaacatttctagtaatttaaatatacctgtcaaacattgacacgtgaggtgtgggatattggaaaaacctttgat |
181 |
Q |
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| T |
25276422 |
tgttgaacataagatactgatacattaacatttctagtaatttaaatatacctgtcaaacactgacacgtgaggtgtgggatattggaaaaacctttgat |
25276323 |
T |
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| Q |
182 |
atgaagtgtcagttctatattcttttcgaaattacgggagccattggcactccgcttattattgacgccgcaactcagaaacgcacatttggccattacg |
281 |
Q |
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| T |
25276322 |
atgaagtgtcagttctatattcttttcgaaattacgggagccattggcacccggcttattattgacgccgaaactcagaaacgcacatttggccattaca |
25276223 |
T |
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| Q |
282 |
cacaggtgctggtggatattgatatttc |
309 |
Q |
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| T |
25276222 |
cgcaggtgctggtggatattgatatttc |
25276195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 25276587 - 25276531
Alignment:
| Q |
15 |
catcacaaatacccatatagagaaaaacagataagtgcgtcacatatccatgtaatg |
71 |
Q |
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| T |
25276587 |
catcacaaatacccttatagagaaaaacagttaagtgtgtcacatatccatgtaatg |
25276531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 17705181 - 17705253
Alignment:
| Q |
225 |
ttggcactccgcttattattgacgccgcaactcagaaacgcacatttggccattacgcacaggtgctggtgga |
297 |
Q |
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| T |
17705181 |
ttggtactcctctcatcattgatgccgcaactcagaaacgcacctttggccattatgcgcgggtgctggtgga |
17705253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 23869413 - 23869337
Alignment:
| Q |
224 |
attggcactccgcttattattgacgccgcaactcagaaacgcacatttggccattacgcacaggtgctggtggatat |
300 |
Q |
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| T |
23869413 |
attggcactcctctcatcattgatatcgcaactcagaaacgcacctttggccattatgtgcgggtgctggtggatat |
23869337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 17111295 - 17111357
Alignment:
| Q |
239 |
attattgacgccgcaactcagaaacgcac-atttggccattacgcacaggtgctggtggatat |
300 |
Q |
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| T |
17111295 |
attattgacgccgcaactcaaaaacgtactttttggtcattacgcgcgggtgctggtggatat |
17111357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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