View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_36 (Length: 313)
Name: NF5265_low_36
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_36 |
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| [»] scaffold0907 (1 HSPs) |
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Alignment Details
Target: scaffold0907 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 48 - 295
Target Start/End: Complemental strand, 3102 - 2855
Alignment:
| Q |
48 |
tcattcgggtcagagaaatcatcattgaaaggatttggaagagctggaaatgaaggtgtagctgtggagaaagattctgatgacccttatcttgattttc |
147 |
Q |
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| T |
3102 |
tcattcgggtcagagaaatcatcattgaaaggatttggaagagctggaaatgaaggagtagctgtggagaaagattctgatgacccttatcttgattttc |
3003 |
T |
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| Q |
148 |
gacattcaatgttgcagatgatattggagaatgagatatattctaaagatgatcttagagagcttttgaactgttttcttcagctgaattcgaaggaaca |
247 |
Q |
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| T |
3002 |
gacattcaatgttgcagatgatattggagaatgagatatattctaaagatgatcttagagagcttttgaactgttttcttcagctgaattcgaaggaaca |
2903 |
T |
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| Q |
248 |
tcatgggattattataagagcttttactgagatttggaatggagtttt |
295 |
Q |
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| T |
2902 |
tcatgggattattataagagcttttactgagatttggaatggagtttt |
2855 |
T |
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Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 111 - 294
Target Start/End: Complemental strand, 42945876 - 42945693
Alignment:
| Q |
111 |
gtggagaaagattctgatgacccttatcttgattttcgacattcaatgttgcagatgatattggagaatgagatatattctaaagatgatcttagagagc |
210 |
Q |
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| T |
42945876 |
gtggagaaagattctgaagatccttatcttgatttcaggcattccatgcttcaaatgatattggagaatgaaatatactctaaagatgaccttagagagc |
42945777 |
T |
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| Q |
211 |
ttttgaactgttttcttcagctgaattcgaaggaacatcatgggattattataagagcttttactgagatttggaatggagttt |
294 |
Q |
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| T |
42945776 |
ttttgaactgttttcttcagctgaatgcaccttaccatcatggtgttattgttagagcttttactgagatttggaatggagttt |
42945693 |
T |
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