View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_37 (Length: 313)
Name: NF5265_low_37
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 55124028 - 55123743
Alignment:
| Q |
10 |
aagaatatgccaaaaccaaactaatatgagagagaagtaacgaagctcatctcatc-----aattaagcaacaaatataatttgcaggaggtgggtgagt |
104 |
Q |
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| T |
55124028 |
aagaatatgccaaaaccaaactaatatgaga----agtaacgaagctcatctcatctcatcaattaagcaacaaatataatttgcaggaggtgggtgagt |
55123933 |
T |
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| Q |
105 |
aaaacaaattaaaaaagaaaagaagcagaatggagtctaagagaaggggtacagaattgaaacagggatggagaagaaagagcatggcttctgtttctgc |
204 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
55123932 |
aaaacaaattaaaaaagaaaagaaacagaatggagtctaagagaaggggtacagaattgaaacagggatggaaaggaaagagcatggcttctgtttctgc |
55123833 |
T |
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| Q |
205 |
acccccattccacttgctcatggtatttggcatcgtcattagcttgttatgtttttctcagtacaaaaacttcaaggctcagttacacaa |
294 |
Q |
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| T |
55123832 |
acccccattccacttgttcatggtatttggcatcgtcattagcttgttatgtttttctcagtacaaaaacttcaaggctcagttacacaa |
55123743 |
T |
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