View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_4 (Length: 564)
Name: NF5265_low_4
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 46629146 - 46628736
Alignment:
| Q |
17 |
acataagtctaataaaccagggatggccagtaaacataggtatacatcaaattaatagctataggcccatcttattcata--atagagtaagtaattaat |
114 |
Q |
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| T |
46629146 |
acataagtctaataaaccagggatggccagtaaacataggtatacatcaaattaatagctataggcccatcttattcatataatagagtaagtaattaat |
46629047 |
T |
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| Q |
115 |
ttgcatatttgttttgatctgaaggatatattttcatatacaaaccactagttggcaatcacatggcatgtttacatat--gctcccccattttacaagg |
212 |
Q |
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| T |
46629046 |
ttgcatatttgttttgatctgaaggatatattttcatatacaaaccactagttggcaatcacatggcatgtttacatatatgctcccccattttacaagg |
46628947 |
T |
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| Q |
213 |
tgttctgttggaggaaacaccacctttggaattttcctcattgccttctctatgatgtatacccttaattctgtaaaattgtacaagttatttgcaaatc |
312 |
Q |
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| T |
46628946 |
tgttctgttggaggaaacaccacctttggaattttcctcattgccttctctatgatgtatacccttaattctgtaaaattgtacaagttatttgcaaatc |
46628847 |
T |
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| Q |
313 |
actctaaaccatatgttaaatagtacatatatgtggtaaatgtcggtaacagcagcaaatatgtttcctgagtcttggaccttagttgaatatataatat |
412 |
Q |
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| T |
46628846 |
actctaaaccatatgttaaatagtacatatatgtggtaaatgtcggtaacagcagcaaatatgtttcctgagtcttggaccttagttgaatatataatat |
46628747 |
T |
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| Q |
413 |
caataatttat |
423 |
Q |
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| T |
46628746 |
caataatttat |
46628736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 437 - 553
Target Start/End: Complemental strand, 46628697 - 46628581
Alignment:
| Q |
437 |
caatatttgatgaaaaatttgcttctattctatggttaaaaactagtatagcaatcattcaacgaatccaacccaaaagtccaaaagcatgtaatataag |
536 |
Q |
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| T |
46628697 |
caatatttgatgaaaaatttgcttctattctatggttaaaaactagtatagcaatcattcaacgaatccaacccaaaagtccaaaagcatgtaatataag |
46628598 |
T |
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| Q |
537 |
atgggccagtgatgatg |
553 |
Q |
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| T |
46628597 |
atgggccagtgatgatg |
46628581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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