View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_45 (Length: 293)
Name: NF5265_low_45
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13652952 - 13652670
Alignment:
| Q |
1 |
attggagttgaaagatgatgatgttgnnnnnnncatggtattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgg |
100 |
Q |
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| T |
13652952 |
attggagttgaaagatgatgatgttgtttttttcatggtattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgg |
13652853 |
T |
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| Q |
101 |
gagagaattggggactctagatcttcaaatgtgttgagtattactgcattgcctttaagtgatgcttgggttagttgtaaaactttgtctaaaacgttat |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
13652852 |
gagagaattggggactctaaatcttcaaatgtgttgagtattactgcattgcctttaagtgatgcttgggttagttgtaaaactttgtctaaaatgatat |
13652753 |
T |
|
| Q |
201 |
ggtccattttgtttgatgtaccgaaacgtggaagatctctacatcgaattatgttctccatgcctggcacgtttctgatgatg |
283 |
Q |
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| T |
13652752 |
ggtccattttgtttgatgtaccgaaacgtggaagatctctacatcgaattatgttctccatgcctggcacgtttcttatgatg |
13652670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 13658381 - 13658254
Alignment:
| Q |
36 |
tggtattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgggagagaattggggactctagatcttcaaatgtgtt |
135 |
Q |
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|||| ||||||||||||||||| |||||||| ||||||||||| ||| || ||||||||||| |||||| |||||| ||||||| || || ||||| |
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| T |
13658381 |
tggtgttgaggtggtggtgaagagggccaatggtgtagagtttaggggcatgaagacgaatttgagagagagctggggattctagattctcgaacgtgtt |
13658282 |
T |
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| Q |
136 |
gagtattactgcattgcctttaagtgat |
163 |
Q |
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| T |
13658281 |
gagtattagtgcattgcctttaagtgat |
13658254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 13647851 - 13647726
Alignment:
| Q |
38 |
gtattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgggagagaattggggactctagatcttcaaatgtgttga |
137 |
Q |
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||||||||| |||||||||| ||||| || ||||||||||| |||||||| | ||||||||||||||| | || || |||||||| ||||||||||||| |
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| T |
13647851 |
gtattgaggaggtggtgaagagggcctatggtgtagagtttagggaagtgaatacgaatttgggagaggactgaggcttctagatcctcaaatgtgttga |
13647752 |
T |
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| Q |
138 |
gtattactgcattgcctttaagtgat |
163 |
Q |
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|||| | |||||| ||||||||||| |
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| T |
13647751 |
gtatgaatgcatttgctttaagtgat |
13647726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 13658197 - 13658137
Alignment:
| Q |
223 |
gaaacgtggaagatctctacatcgaattatgttctccatgcctggcacgtttctgatgatg |
283 |
Q |
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||||| |||||||||||||||||||| | ||| |||||||||||||||||||| |||||| |
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| T |
13658197 |
gaaacttggaagatctctacatcgaagcaagttttccatgcctggcacgtttcttatgatg |
13658137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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