View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_50 (Length: 271)
Name: NF5265_low_50
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 45177518 - 45177782
Alignment:
| Q |
1 |
ttacattcggtggattattttgtttgcttcctcgtggttaacgacgttcaaaattacgattaattacattcggtgaatgattgattagttgcaacatctt |
100 |
Q |
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| T |
45177518 |
ttacattcggtggattattttgtttgcttcctcgtggttaatgacgttcaaaattactattaattacattcggtgaatgattgattagttgcaacatctt |
45177617 |
T |
|
| Q |
101 |
gttataacttatgttctttagctatctactgaatgtaattaagcacttatttgaactgcattaaccatttaaattgttgtcaaatttgtgtaaaaatatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45177618 |
gttataacttatgttctttagctatctactgaatgtaattaagcacttatttgaactgcattaaccatttaaattgttgtcaaatttgtgtaaaaatatc |
45177717 |
T |
|
| Q |
201 |
atttatgttctgaataatgaatgcttctttcgttctaacttgtgtttgtaagtttatttattgat |
265 |
Q |
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| T |
45177718 |
atttatgttctgaataatgaatgcttctttcgttctaacttgtgtttgtaagtttatttattgat |
45177782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 5078988 - 5078928
Alignment:
| Q |
124 |
atctactgaatgtaattaagcacttatttgaactgcattaaccatttaaattgttgtcaaa |
184 |
Q |
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| T |
5078988 |
atctactaaatgtaattaaccatatatttgaactgcattaaccatccaaattgttgtcaaa |
5078928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 39779490 - 39779435
Alignment:
| Q |
125 |
tctactgaatgtaattaagcacttatttgaactgcattaaccatttaaattgttgt |
180 |
Q |
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| T |
39779490 |
tctactgaatataattagccacatatttgaactgctttaaccatataaattgttgt |
39779435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 6837203 - 6837152
Alignment:
| Q |
136 |
taattaagcacttatttgaactgcattaaccatttaaattgttgtcaaattt |
187 |
Q |
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||||||| ||| |||||| | |||||||||||||||||||| |||||||||| |
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| T |
6837203 |
taattaaccacatatttgtattgcattaaccatttaaattgatgtcaaattt |
6837152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 42467900 - 42467950
Alignment:
| Q |
136 |
taattaagcacttatttgaactgcattaaccatttaaattgttgtcaaatt |
186 |
Q |
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||||||| ||| ||||||||||||||||||||| | |||||||| |||||| |
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| T |
42467900 |
taattaaccacatatttgaactgcattaaccatctgaattgttgccaaatt |
42467950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 37494792 - 37494744
Alignment:
| Q |
130 |
tgaatgtaattaagcacttatttgaactgcattaaccatttaaattgtt |
178 |
Q |
| |
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|||| |||||||| ||| ||||||||||||||||||||| |||||||| |
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| T |
37494792 |
tgaacgtaattaatcacatatttgaactgcattaaccatccaaattgtt |
37494744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 4364285 - 4364228
Alignment:
| Q |
148 |
tatttgaactgcattaaccatttaaattgttgtc-aaatttgtgtaaaaatatcattt |
204 |
Q |
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| T |
4364285 |
tatttgaattgcgttaactatctaaattgttgtcaaaatttgtgttaaaatatcattt |
4364228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 15368095 - 15368155
Alignment:
| Q |
128 |
actgaatgtaattaagcacttatttgaactgcattaaccatttaaattgttgtcaaatttg |
188 |
Q |
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||||||||||||||| ||| ||||| ||| || |||||| | |||||||||||||||||| |
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| T |
15368095 |
actgaatgtaattaaccacatatttcaacagcgttaaccttccaaattgttgtcaaatttg |
15368155 |
T |
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