View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_52 (Length: 264)
Name: NF5265_low_52
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_52 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 47254042 - 47254288
Alignment:
| Q |
19 |
gagatttcttcatactttctgcaaatttaaaaagtnnnnnnnnnnnn-ttgtcaattcaacagcaaactaacactaaaattacaaaaacataacacaatt |
117 |
Q |
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| T |
47254042 |
gagatttcttcatactttctgcaaatttaaaaagtaaaaaaaaaaaaattgtcaattcaacagcaaactaacactaaaattacaaaaacataacacaatt |
47254141 |
T |
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| Q |
118 |
tttgagatcttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattagacaggaatctgtcaatgtatgaa |
217 |
Q |
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| T |
47254142 |
tttgagatcttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattggacaggaatctgtcaatgtatgaa |
47254241 |
T |
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| Q |
218 |
actgcaagatgaagggtttgagggagaagcttgtattcttcagcaac |
264 |
Q |
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| T |
47254242 |
acagcaagatgaagggtttgagggagaagcttgtattcttcagcaac |
47254288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 47249722 - 47249860
Alignment:
| Q |
126 |
cttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattagacaggaatctgtcaatgtatgaaactgcaag |
225 |
Q |
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| T |
47249722 |
cttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgtatgaaactgacag |
47249821 |
T |
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| Q |
226 |
atgaagggtttgagggagaagcttgtattcttcagcaac |
264 |
Q |
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| T |
47249822 |
atgaagtgtctcgggaagaagcttgtattcatctgcaac |
47249860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 264
Target Start/End: Original strand, 47242886 - 47243031
Alignment:
| Q |
119 |
ttgagatcttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattagacaggaatctgtcaatgtatgaaa |
218 |
Q |
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| T |
47242886 |
ttgagatcttacgatgcaatgagcatggatgaaacaccaagcaactgaagcttagatctaatgataggttggttagataagaatctatcaatgtatgaaa |
47242985 |
T |
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| Q |
219 |
ctgcaagatgaagggtttgagggagaagcttgtattcttcagcaac |
264 |
Q |
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| T |
47242986 |
cagagagatgaagggtttctggaagaagcgtgtattcatctgcaac |
47243031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 47266025 - 47265980
Alignment:
| Q |
126 |
cttacgatgcgatgagcatggatgaaacaccaagcaattgaagctt |
171 |
Q |
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| T |
47266025 |
cttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
47265980 |
T |
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