View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_55 (Length: 257)
Name: NF5265_low_55
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 13944518 - 13944289
Alignment:
| Q |
19 |
agaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaatacataaaataatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13944518 |
agaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaacacataaaataatg |
13944419 |
T |
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| Q |
119 |
gttctaatcatcttcgacaggaaacccataataacaagagtttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgc |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944418 |
gttctaatcatcttcgacaggaaacccatagtaacaagattttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgc |
13944319 |
T |
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| Q |
219 |
caacaactccttttcttttattagtattat |
248 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
13944318 |
caacaactccttttcttttattagtattat |
13944289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 14085707 - 14085478
Alignment:
| Q |
19 |
agaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaatacataaaataatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14085707 |
agaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaactaacacataaaataatg |
14085608 |
T |
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| Q |
119 |
gttctaatcatcttcgacaggaaacccataataacaagagtttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgc |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085607 |
gttctaatcatcttcgacaggaaacccatagtaacaagattttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgc |
14085508 |
T |
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| Q |
219 |
caacaactccttttcttttattagtattat |
248 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
14085507 |
caacaactccttttcttttattagtattat |
14085478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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