View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_58 (Length: 254)
Name: NF5265_low_58
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_58 |
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| [»] scaffold0007 (4 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 31118 - 31184
Alignment:
| Q |
182 |
ctgaactaaccataactcgttaacaacatcatattcaatgaatagtaccatatgccatttcttctca |
248 |
Q |
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| T |
31118 |
ctgaactaaccataactcgttaacaacatcatattcaatgaatagtaccatatgccatatcttctca |
31184 |
T |
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Target: scaffold0007; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 66460 - 66526
Alignment:
| Q |
182 |
ctgaactaaccataactcgttaacaacatcatattcaatgaatagtaccatatgccatttcttctca |
248 |
Q |
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| T |
66460 |
ctgaactaaccataactcgttaacaacttcatattcaatgaatagtaccatatgccatatcttctca |
66526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 30957 - 30999
Alignment:
| Q |
19 |
gattccttatcgaacttaagattacttgtgatcaatcttctag |
61 |
Q |
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| T |
30957 |
gattccttatcaaacttaagattacttgtgatcaatcttctag |
30999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 66297 - 66339
Alignment:
| Q |
19 |
gattccttatcgaacttaagattacttgtgatcaatcttctag |
61 |
Q |
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|||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
66297 |
gattccttgttgaacttaagattatttgtgatcaatcttctag |
66339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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