View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_59 (Length: 254)
Name: NF5265_low_59
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_59 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 21445148 - 21445387
Alignment:
| Q |
3 |
ttgaggaggagcagagaggattggatcagctgaactatgctttcctaatgcaggaatactaagagaacgttttcttaatttggctctaccatttgatgat |
102 |
Q |
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|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445148 |
ttgaggagcaccagaaaggattggatcagctgaactatgctttcctaatgcaggaatactaagagaacgttttcttaatttggctctaccatttgatgat |
21445247 |
T |
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| Q |
103 |
agtttcttctcactcttttcagcaagtaacgaaggataagcgcaaaagggttcttgagatgccactgctattggcaccgctattggcaccggctcacttc |
202 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21445248 |
agtttcttctcactcttttctgcaagtaacgaaggataagcgcaaaagggttcttgagatgccact------------gctattggcaccggctcacttc |
21445335 |
T |
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| Q |
203 |
tagttctaaggaattggtcgagattttggcggtatttaatcccatggatttt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445336 |
tagttctaaggaattggtcgagattttggcggtatttaatcccatggatttt |
21445387 |
T |
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