View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_60 (Length: 253)
Name: NF5265_low_60
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 13167941 - 13167779
Alignment:
| Q |
1 |
aaaagagatatgtttattgtgactgtgagtggtcctaatgannnnnnnaatagccacttcacatcatacattcattattttttaatggggaagaggaaga |
100 |
Q |
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| T |
13167941 |
aaaagagatatgtttattgtgactgtgagtggtcgtaatgatttttttaatagccacttcacatcatacattcattattttttaatggggaagaggaaga |
13167842 |
T |
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| Q |
101 |
tagacatctacttgtttatttagaagaattgatcgaaagagtttcttgggttcacattagaag |
163 |
Q |
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| T |
13167841 |
tagacatttacttgtttatttagaagaattgatcgaaagagtttcttgggttcacattagaag |
13167779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 13167753 - 13167691
Alignment:
| Q |
180 |
aacgagggccatt-agaaggttgaaattatattaaacctatgccctaatccagctcatgccta |
241 |
Q |
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| T |
13167753 |
aacgagggccatttagaaggttgaaattatattaaacctatgccctaatccagctcatgccta |
13167691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 12850399 - 12850317
Alignment:
| Q |
80 |
ttttaatggggaagaggaagatagacatctacttgtttatttagaagaattgatcgaaagagtttcttgggttcacattagaag |
163 |
Q |
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| T |
12850399 |
ttttaacggggatgaggaagataaactt-tgcttgtttatttagaagaattgatcaaaagagtttcatgtatttacattagaag |
12850317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 12850290 - 12850236
Alignment:
| Q |
188 |
ccattagaaggttgaaatt-atattaaacctatgccctaatccagctcatgccta |
241 |
Q |
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| T |
12850290 |
ccattagaaggttgaaatttatgtaaaacctatgacctaatccagctcatgccta |
12850236 |
T |
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