View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_62 (Length: 252)
Name: NF5265_low_62
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_62 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 91 - 252
Target Start/End: Complemental strand, 19222854 - 19222695
Alignment:
| Q |
91 |
tcctcaacttattttacaggcataatagcaaactttttcaaaccaaatatttctaattaaattcatcaagtcttcaaagattataaagatataaattagt |
190 |
Q |
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| T |
19222854 |
tcctcaacttattttacaggcataatagcaaactttttcaaaccaaatatttctaattaaattcataaagtcttcaaagattataaagatataaattagc |
19222755 |
T |
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| Q |
191 |
tcacagaaaatttatttatattgtaacgattttcatacgatgcactttttcaatatattttc |
252 |
Q |
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| T |
19222754 |
tcacagaaaatttatttatattgtaacgattttc--acgatgcactttttcaaaatattttc |
19222695 |
T |
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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 19223062 - 19222983
Alignment:
| Q |
12 |
ataatacttctagaggtatttggtcctcgagatattttcaactgacgtagttctcaaacatactttttggccaatatttt |
91 |
Q |
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| T |
19223062 |
ataatacttctaaaggtatttggtcctcgagacattttcaactgacgtagttcttaaacataattttagggcaacatttt |
19222983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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