View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_64 (Length: 250)
Name: NF5265_low_64
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4656478 - 4656692
Alignment:
| Q |
1 |
aacaatctcaaagatggttttcattagggtttcaattaagttcttgacctttccataatttttattactctataaaacaacaaagtagggttttttcatt |
100 |
Q |
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| T |
4656478 |
aacaatctcaaagatggttttcattagggtttcaattaagttcttgacctttccataatttttattactctataaaacaacaaagtagggttttttcatt |
4656577 |
T |
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| Q |
101 |
ttccctatattttgagaattgagttgagtgagagagttaaacatatatgatatttggtttcttaaatttgagttaaatggaggaatacactaataatcca |
200 |
Q |
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| T |
4656578 |
ttccctatattttgagaattgagttgagtgagagagttaaacatatatgatatttggtttcttaaatttgagttaaatggaggaatacactaataatcca |
4656677 |
T |
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| Q |
201 |
aatccaaatccaaat |
215 |
Q |
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| T |
4656678 |
aatccaaatccaaat |
4656692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 1038734 - 1038504
Alignment:
| Q |
5 |
atctcaaagatggttttcatt-agggtttcaattaagttcttgacctttccataatttttattactctataaaacaacaaagtagggttttttcattttc |
103 |
Q |
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| T |
1038734 |
atctcaaacatggttttcatttagggtttcaattaagttcttgacctttccataattttcattactccataaaacaacaaagtagggttttttcacttac |
1038635 |
T |
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| Q |
104 |
cctatattttgagaattgagttgagtgagagagttaaacatatatgatatttggtttcttaaatttgagttaaatggaggaatacactaataatccaaat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1038634 |
cctatattttgagaattgagttgagtgagagagttataaatatatgatatttggtttcttaaatttgagttaaatggaggaatacagtaataatccaaat |
1038535 |
T |
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| Q |
204 |
ccaaatccaaatccaaattcaaggccaaatt |
234 |
Q |
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| T |
1038534 |
ccaaattcaaatcaaagttcaaggccaaatt |
1038504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 1045640 - 1045410
Alignment:
| Q |
5 |
atctcaaagatggttttcatt-agggtttcaattaagttcttgacctttccataatttttattactctataaaacaacaaagtagggttttttcattttc |
103 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || | |
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| T |
1045640 |
atctcaaacatggttttcatttagggtttcaattaagttcttgacctttccataattttcattactccataaaacaacaaagtagggttttttcacttac |
1045541 |
T |
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| Q |
104 |
cctatattttgagaattgagttgagtgagagagttaaacatatatgatatttggtttcttaaatttgagttaaatggaggaatacactaataatccaaat |
203 |
Q |
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| T |
1045540 |
cctatattttgagaattgagttgagtgagagagttataaatatatgatatttggtttcttaaatttgagttaaatggaggaatacagtaataatccaaat |
1045441 |
T |
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| Q |
204 |
ccaaatccaaatccaaattcaaggccaaatt |
234 |
Q |
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|||||| |||||| || |||||||||||||| |
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| T |
1045440 |
ccaaattcaaatcaaagttcaaggccaaatt |
1045410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 4656672 - 4656705
Alignment:
| Q |
201 |
aatccaaatccaaatccaaattcaaggccaaatt |
234 |
Q |
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| T |
4656672 |
aatccaaatccaaatccaaattcaaggccaaatt |
4656705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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