View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5265_low_68 (Length: 247)

Name: NF5265_low_68
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5265_low_68
NF5265_low_68
[»] chr4 (2 HSPs)
chr4 (1-233)||(22085426-22085658)
chr4 (99-219)||(30518166-30518286)
[»] chr2 (3 HSPs)
chr2 (79-221)||(40040775-40040917)
chr2 (96-219)||(38895872-38895995)
chr2 (141-217)||(42898288-42898364)
[»] chr7 (2 HSPs)
chr7 (81-233)||(40749364-40749516)
chr7 (99-214)||(44150818-44150933)
[»] chr8 (2 HSPs)
chr8 (99-217)||(5788741-5788859)
chr8 (82-219)||(33186723-33186860)
[»] chr1 (8 HSPs)
chr1 (96-218)||(12804526-12804648)
chr1 (79-221)||(28496104-28496246)
chr1 (80-219)||(36989328-36989467)
chr1 (81-232)||(12774912-12775063)
chr1 (79-232)||(31644056-31644209)
chr1 (96-208)||(42287116-42287228)
chr1 (99-208)||(4160376-4160485)
chr1 (81-214)||(50788819-50788952)
[»] chr3 (1 HSPs)
chr3 (95-219)||(52248369-52248493)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 22085426 - 22085658
Alignment:
Q  1 aaaatgtaaattgtttctatctcaaatccaacggtgccagtagtgactgctatggcgaaagatagtaaatatatagtatatacctggagaaaattgtgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22085426 aaaatgtaaattgtttctatctcaaatccaacggtgccagtagtgactgctatggcgaaagatagtaaatatatagtatatacctggagaaaattgtgcc 22085525  T
Q  101 acaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccacttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22085526 acaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccacttc 22085625  T
Q  201 ttctcaccatgttttctactataatgtttcttt 233  Q
    |||||||||||||||||||||||||||||||||    
T  22085626 ttctcaccatgttttctactataatgtttcttt 22085658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 30518166 - 30518286
Alignment:
Q  99 ccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccact 198  Q
    ||||| ||||||||||| |||||||| |||||  | ||    |||||||||||||| || ||||| |||||    || || ||||| |||||||||||||    
T  30518166 ccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccact 30518265  T
Q  199 tcttctcaccatgttttctac 219  Q
    |||| |||||||| |||||||    
T  30518266 tcttttcaccatgctttctac 30518286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 40040917 - 40040775
Alignment:
Q  79 tatacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttgga 178  Q
    ||||||||||||| | |||||||||||||||| |||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||    
T  40040917 tatacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttaga 40040818  T
Q  179 acacttttcacacttccacttcttctcaccatgttttctacta 221  Q
    |||||| ||||||||||||||||||||||| || |||||||||    
T  40040817 acacttatcacacttccacttcttctcaccgtgctttctacta 40040775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 38895872 - 38895995
Alignment:
Q  96 gtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttcc 195  Q
    |||||||||||||||||||| |||||||| |||||| ||||    || ||||||||||| |||||||| |||||    || || ||||| ||||||||||    
T  38895872 gtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacacttcc 38895971  T
Q  196 acttcttctcaccatgttttctac 219  Q
    ||||||||||||| ||||| ||||    
T  38895972 acttcttctcaccgtgtttcctac 38895995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 42898364 - 42898288
Alignment:
Q  141 tgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccacttcttctcaccatgttttct 217  Q
    ||||||||||| || |||||||||||||| ||||| || ||||| ||||| ||||||||||||||||| || |||||    
T  42898364 tgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcttctcaccgtgctttct 42898288  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 40749516 - 40749364
Alignment:
Q  81 tacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaac 180  Q
    ||||| ||||| | ||| ||||||||||| || || |||||||| |||||| | ||  | |||||||||||||||||||| |||||||||||||||||||    
T  40749516 taccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaac 40749417  T
Q  181 acttttcacacttccacttcttctcaccatgttttctactataatgtttcttt 233  Q
    |||| ||||||||||| |||||||| ||||||||||||||| |||||||||||    
T  40749416 acttatcacacttccatttcttctcgccatgttttctactaaaatgtttcttt 40749364  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 44150818 - 44150933
Alignment:
Q  99 ccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccact 198  Q
    ||||||||||||||||| || ||||| |||||| | ||    ||||| |||||||| |||||||| |||||| | || || ||||| ||||| ||||| |    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  199 tcttctcaccatgttt 214  Q
    ||||||||||||||||    
T  44150918 tcttctcaccatgttt 44150933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 5788741 - 5788859
Alignment:
Q  99 ccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccact 198  Q
    ||||| |||||| | || |||||||| |||||| | |||  |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  5788741 ccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaacacttttcacatttccact 5788840  T
Q  199 tcttctcaccatgttttct 217  Q
    ||||||||||||| |||||    
T  5788841 tcttctcaccatgctttct 5788859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 33186860 - 33186723
Alignment:
Q  82 acctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaaca 181  Q
    ||||||| ||||  || |||||||||||||| ||||||||||  |||||||  ||    ||||||||||||||||||||||| ||||||||||| |||||    
T  33186860 acctggaaaaaacggttccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaaca 33186761  T
Q  182 cttttcacacttccacttcttctcaccatgttttctac 219  Q
     || ||||| |||||||| |||||||||||||||||||    
T  33186760 tttctcacatttccactttttctcaccatgttttctac 33186723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 12804526 - 12804648
Alignment:
Q  96 gtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttcc 195  Q
    |||||||| |||||| | ||||| ||||| |||||| ||||   |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  12804526 gtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacatttcc 12804625  T
Q  196 acttcttctcaccatgttttcta 218  Q
    |||| ||||||||||| ||||||    
T  12804626 actttttctcaccatgctttcta 12804648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 28496104 - 28496246
Alignment:
Q  79 tatacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttgga 178  Q
    ||||||| ||||| |  |||||||| ||||||||||| ||||| || |||||  | ||  |||||||||||||||||||||| ||||||||||| |||||    
T  28496104 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 28496203  T
Q  179 acacttttcacacttccacttcttctcaccatgttttctacta 221  Q
    ||| |||||||| ||||||||||||||||| || |||||||||    
T  28496204 acatttttcacatttccacttcttctcaccgtgctttctacta 28496246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 36989467 - 36989328
Alignment:
Q  80 atacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaa 179  Q
    ||||||||| || || || ||||| ||||||||||| || || || ||||| || |||  |||||||||||||||||||||||| ||||||||||| |||    
T  36989467 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 36989368  T
Q  180 cacttttcacacttccacttcttctcaccatgttttctac 219  Q
    ||||| ||||| |||||||| ||||||||||| |||||||    
T  36989367 cacttatcacatttccactttttctcaccatgctttctac 36989328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 12775063 - 12774912
Alignment:
Q  81 tacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaac 180  Q
    ||||||||||| |  |||||||| |||||| | |||||  |||| |||||| | ||   |||||||||||||||||||||||| ||||| ||||| ||||    
T  12775063 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaac 12774964  T
Q  181 acttttcacacttccacttcttctcaccatgttttctactataatgtttctt 232  Q
    |||||||||||||||| || ||||||||||| ||||||  ||| ||||||||    
T  12774963 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttctt 12774912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 31644056 - 31644209
Alignment:
Q  79 tatacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttgga 178  Q
    |||||||||| ||||  || |||||||||||||| || |||| ||| |||||  | ||    ||||||||||||||||| ||||| |||||  |||| ||    
T  31644056 tatacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttga 31644155  T
Q  179 acacttttcacacttccacttcttctcaccatgttttctactataatgtttctt 232  Q
     ||||| ||||| ||||| || ||||||||||||||||||||||||||||||||    
T  31644156 gcacttatcacatttccattttttctcaccatgttttctactataatgtttctt 31644209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 42287228 - 42287116
Alignment:
Q  96 gtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttcc 195  Q
    ||||||||||||||| | || |||||||| |||||| ||||   ||| |||||||| ||||||||||| ||||||||||| || || |||||||| ||||    
T  42287228 gtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagcatttttcacatttcc 42287129  T
Q  196 acttcttctcacc 208  Q
    |||||||||||||    
T  42287128 acttcttctcacc 42287116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 4160485 - 4160376
Alignment:
Q  99 ccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccact 198  Q
    ||||| ||||| || |||||| |||| |||||||| |||  ||||||||||||||| || ||||||||||||   || ||||| || |||||||||||||    
T  4160485 ccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttctcacacttccact 4160386  T
Q  199 tcttctcacc 208  Q
    ||||||||||    
T  4160385 tcttctcacc 4160376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 50788819 - 50788952
Alignment:
Q  81 tacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaac 180  Q
    ||||||||||| |  |||||||| |||||  | || ||||| || |||||| ||||   ||| || ||||||||||||||||| ||||| ||||| || |    
T  50788819 tacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagc 50788918  T
Q  181 acttttcacacttccacttcttctcaccatgttt 214  Q
    |||| ||||||||||| |||||||||||||||||    
T  50788919 acttatcacacttccatttcttctcaccatgttt 50788952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 52248369 - 52248493
Alignment:
Q  95 tgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttc 194  Q
    |||||||||||||||||| |||||||||||||||||  ||||  ||||| ||||| ||||| |||   | || ||||| || |||||   |||||| |||    
T  52248369 tgtgccacaatcacatttatactctctagttccacagctcttcatatgaactttcaaatcacatttcgcagcgtattttttagaacaacgttcacatttc 52248468  T
Q  195 cacttcttctcaccatgttttctac 219  Q
    || |||||||||||||| |||||||    
T  52248469 catttcttctcaccatgctttctac 52248493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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