View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_69 (Length: 244)
Name: NF5265_low_69
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 47242768 - 47242997
Alignment:
| Q |
1 |
ctatggcctttggtggggtgatttcttcatacttcctgcatattaaatagaattaaaattttgattcaaaagcaaactaacataacagcatttatgnnnn |
100 |
Q |
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| T |
47242768 |
ctatggcctttggtggggtgatttcttcatacttcctgcatattaaatagaattaaaattttgattcaaaagcaaactaacataacagcatttatgaaaa |
47242867 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnnngttgttgagatcttacgatgcaatgagcatggatgaaacaccaagtaactgaagcttagatctaatgataggttggttagataa |
200 |
Q |
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| T |
47242868 |
taaaaaaagaaaaa--gttgttgagatcttacgatgcaatgagcatggatgaaacaccaagcaactgaagcttagatctaatgataggttggttagataa |
47242965 |
T |
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| Q |
201 |
gaatctatcaatgtatgaaacagagagatgaa |
232 |
Q |
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| T |
47242966 |
gaatctatcaatgtatgaaacagagagatgaa |
47242997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 47249711 - 47249826
Alignment:
| Q |
117 |
gttgttgagatcttacgatgcaatgagcatggatgaaacaccaagtaactgaagcttagatctaatgataggttggttagataagaatctatcaatgtat |
216 |
Q |
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| T |
47249711 |
gttgttgagggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgtat |
47249810 |
T |
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| Q |
217 |
gaaacagagagatgaa |
232 |
Q |
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| T |
47249811 |
gaaactgacagatgaa |
47249826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 47254143 - 47254254
Alignment:
| Q |
121 |
ttgagatcttacgatgcaatgagcatggatgaaacaccaagtaactgaagcttagatctaatgataggttggttagataagaatctatcaatgtatgaaa |
220 |
Q |
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| T |
47254143 |
ttgagatcttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattggacaggaatctgtcaatgtatgaaa |
47254242 |
T |
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| Q |
221 |
cagagagatgaa |
232 |
Q |
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||| ||||||| |
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| T |
47254243 |
cagcaagatgaa |
47254254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 47249204 - 47249242
Alignment:
| Q |
6 |
gcctttggtggggtgatttcttcatacttcctgcatatt |
44 |
Q |
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| T |
47249204 |
gcctttggtggggtaatttcttcatactttctgcatatt |
47249242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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