View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_71 (Length: 241)
Name: NF5265_low_71
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_71 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0263 (1 HSPs) |
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| [»] scaffold0351 (1 HSPs) |
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| [»] scaffold0063 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 453178 - 452969
Alignment:
| Q |
13 |
caaaggcatgcacttatatctgtttaattggccatacacaatagtaataaagatattattttattatttattacaaattaaaacataagttaagataggt |
112 |
Q |
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| T |
453178 |
caaaggcatgcacttatatctgtttatttggccatacacaatagtaataaagatattattttattatttattacaaattaaaacataagttaagataggt |
453079 |
T |
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| Q |
113 |
tggattagatgcaatagtttttctaccctttgaaagctatattattcaatgtgtatatatagggttgctaatttacatccagataaaaacaataaggttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
453078 |
tggattagatgcaatagtttttctaccctttgaaagctatattattcaatgtgtatatatagggttgctaatttacatccagataaaaacaataaggttt |
452979 |
T |
|
| Q |
213 |
aaattagaaa |
222 |
Q |
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|||||||||| |
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| T |
452978 |
aaattagaaa |
452969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 110890 - 111046
Alignment:
| Q |
13 |
caaaggcatgcacttatatctgtttaattggccatacacaatagtaataaagatattattttattatttattacaaattaaaacataagttaagataggt |
112 |
Q |
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||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||| |
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| T |
110890 |
caaaggcatgcgattatatctgtttatttggccgtacacaatagtaataaagatattattttatta-ttattacaatttaaaacataggataagataggt |
110988 |
T |
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| Q |
113 |
tggattagatgcaatagtttttctaccctttgaaagctatattattcaatgtgtatata |
171 |
Q |
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| T |
110989 |
tggatcagatgcaacaatttttctaccc-ttgaaagctatattattcaatgcgtatata |
111046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 21473 - 21601
Alignment:
| Q |
45 |
catacacaatagtaataaagatattattttattatttattacaaattaaaacataagttaagataggttggattagatgcaatagtttttctaccctttg |
144 |
Q |
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| T |
21473 |
catacacaataataataaagatattattttattatttattacaatttaaaacataagttaagataggttggatcagatgcaataatttttctaccctttg |
21572 |
T |
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| Q |
145 |
aaagctatattattcaatgtgtatatata |
173 |
Q |
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| T |
21573 |
aaagctatattattcaatgtgtatgtata |
21601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 10700 - 10541
Alignment:
| Q |
13 |
caaaggcatgcacttatatctgtttaattggccatacacaatagtaataaagatattattttattatttattacaaattaaaacataagttaagataggt |
112 |
Q |
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||||||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||| |||||||||| | |||||||||| |
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| T |
10700 |
caaaggcatgcgattatatctgtttatttggccgtacacaatattaataaagatattattttattatt-attacaatttaaaacataggataagataggt |
10602 |
T |
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| Q |
113 |
tggattagatgcaatagtttttctaccctttgaaagctatattattcaatgtgtatatata |
173 |
Q |
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||||| | |||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10601 |
tggatcaaatgcaacaatttttctaccctttgaaagctatattattcaatgtgtatatata |
10541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 35911 - 36023
Alignment:
| Q |
30 |
atctgtttaattggccatacacaatagtaataaagatattattttattatttattacaaattaaaacataagttaagataggttggattagatgcaatag |
129 |
Q |
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||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | ||||||||||||||| |||||||||| |
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| T |
35911 |
atctgtttatttggccgtactcaatagtaataaagatattattttattatt-attacaatttaaaacataggataagataggttggatcagatgcaataa |
36009 |
T |
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| Q |
130 |
tttttctacccttt |
143 |
Q |
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| T |
36010 |
tttttctacccttt |
36023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 36046 - 36078
Alignment:
| Q |
138 |
ccctttgaaagctatattattcaatgtgtatat |
170 |
Q |
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| T |
36046 |
ccctttgaaagctatattattcaatgtgtatat |
36078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 6278866 - 6279028
Alignment:
| Q |
13 |
caaaggcatgcacttatatctgtttaattggccatacacaatagtaataaagatattattttattatttattacaaattaaaacataagttaagata--g |
110 |
Q |
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||||| ||||| | |||||||||||| |||||| ||||||||||||||||||||||| || ||||||| ||| || ||| ||| || | ||||||| | |
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| T |
6278866 |
caaagacatgcgcctatatctgtttatttggccgtacacaatagtaataaagatattgttatattatt-attgaaatttataacttaggataagatatag |
6278964 |
T |
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| Q |
111 |
gttggattaga----tgcaatagtttttctaccctttgaaagctatattattcaatgtgtatat |
170 |
Q |
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||| ||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
6278965 |
gtttgatcagacagatgcaataatttttctaccctttaaaagctatattattcaatgtgtatat |
6279028 |
T |
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