View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5265_low_75 (Length: 239)

Name: NF5265_low_75
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5265_low_75
NF5265_low_75
[»] chr5 (4 HSPs)
chr5 (1-222)||(6810277-6810498)
chr5 (157-222)||(6799375-6799440)
chr5 (49-136)||(6820134-6820215)
chr5 (1-42)||(12866468-12866509)
[»] chr8 (1 HSPs)
chr8 (61-139)||(24323666-24323744)
[»] scaffold0329 (1 HSPs)
scaffold0329 (54-139)||(17194-17279)
[»] chr7 (1 HSPs)
chr7 (1-45)||(3226859-3226903)
[»] chr1 (1 HSPs)
chr1 (55-139)||(19038783-19038867)
[»] chr6 (1 HSPs)
chr6 (1-45)||(2367457-2367501)
[»] chr3 (1 HSPs)
chr3 (1-45)||(54317275-54317319)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6810277 - 6810498
Alignment:
Q  1 tttggttcggacgggtatccacatatatggattttgttgccatgcttaatgttgaccactatgttttttgaagctcccctcgtggttgatgttgatactt 100  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6810277 tttggttcggacgggtatccacggatatgggttttgttgccatgcttaatgttgaccactatgttttttgaagctcccctcgtggttgatgttgatactt 6810376  T
Q  101 ttctcaagtgtattaaatcgttccctaaagagacatcttatatgaatgtggttacatatgaatgtataggtatatccaaactcttggacagcaacaatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6810377 ttctcaagtgtattaaatcgttccctaaagagacatcttatatgaatgtggttacatatgaatgtataggtatatccaaactcttggacagcaacaatgg 6810476  T
Q  201 tgtcattggataaccaaggtat 222  Q
    ||||||||||||||||||||||    
T  6810477 tgtcattggataaccaaggtat 6810498  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 6799375 - 6799440
Alignment:
Q  157 tatgaatgtataggtatatccaaactcttggacagcaacaatggtgtcattggataaccaaggtat 222  Q
    ||||||||| ||||| ||||||||||| |||||||||| | |||| ||||||||||||||||||||    
T  6799375 tatgaatgtgtaggtgtatccaaactcgtggacagcaatattggtatcattggataaccaaggtat 6799440  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 6820134 - 6820215
Alignment:
Q  49 atgttgaccactatgttttttgaagctcccctcgtggttgatgttgatacttttctcaagtgtattaaatcgttccctaaagagacat 136  Q
    |||| ||||||| |||||||||||||||||||||||||| |  |||      ||||||||| |||||||| |||||||||||||||||    
T  6820134 atgtcgaccactgtgttttttgaagctcccctcgtggtttacattg------ttctcaagtttattaaattgttccctaaagagacat 6820215  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12866509 - 12866468
Alignment:
Q  1 tttggttcggacgggtatccacatatatggattttgttgcca 42  Q
    ||||||||||||||||| |||||| ||||| |||||||||||    
T  12866509 tttggttcggacgggtaaccacatgtatgggttttgttgcca 12866468  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 24323744 - 24323666
Alignment:
Q  61 atgttttttgaagctcccctcgtggttgatgttgatacttttctcaagtgtattaaatcgttccctaaagagacatctt 139  Q
    |||||||||||||||||||| |||||||| ||||| ||| |||||  ||| |||||||||||||  |||||||||||||    
T  24323744 atgttttttgaagctccccttgtggttgaagttgacactgttctccggtgcattaaatcgttcctcaaagagacatctt 24323666  T

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Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 17194 - 17279
Alignment:
Q  54 gaccactatgttttttgaagctcccctcgtggttgatgttgatacttttctcaagtgtattaaatcgttccctaaagagacatctt 139  Q
    |||||| ||||||| |||||||||||| |||||||| | ||| ||  |||| || |||||||| ||||| ||||||| ||||||||    
T  17194 gaccaccatgttttctgaagctccccttgtggttgaaggtgacaccgttctgaaatgtattaagtcgtttcctaaagggacatctt 17279  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3226903 - 3226859
Alignment:
Q  1 tttggttcggacgggtatccacatatatggattttgttgccatgc 45  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||    
T  3226903 tttggttcggacgggtaaccgcatgtatggattttgttgccatgc 3226859  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 19038867 - 19038783
Alignment:
Q  55 accactatgttttttgaagctcccctcgtggttgatgttgatacttttctcaagtgtattaaatcgttccctaaagagacatctt 139  Q
    ||||| ||||||| |||||||||||| |||||||| ||| | ||  ||||||| || |||| |||||| ||||||| ||||||||    
T  19038867 accaccatgttttctgaagctccccttgtggttgaagttaacaccgttctcaaatgcattatatcgtttcctaaagggacatctt 19038783  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2367457 - 2367501
Alignment:
Q  1 tttggttcggacgggtatccacatatatggattttgttgccatgc 45  Q
    ||||||||||||||||| ||||  |||||| ||||||||||||||    
T  2367457 tttggttcggacgggtaaccacggatatgggttttgttgccatgc 2367501  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 54317275 - 54317319
Alignment:
Q  1 tttggttcggacgggtatccacatatatggattttgttgccatgc 45  Q
    |||||||||| |||||| ||||  |||||||||||||||||||||    
T  54317275 tttggttcgggcgggtaaccacggatatggattttgttgccatgc 54317319  T

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