View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_78 (Length: 238)
Name: NF5265_low_78
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17752041 - 17752262
Alignment:
| Q |
1 |
attaggcatactctctgttttcatccgaaaattcccaaggagggaaaatgtaggtctcctggatacccagggtatgggatagatagttttctgtattgat |
100 |
Q |
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| T |
17752041 |
attaggcatactctctgttttcatccgaaaatccccaaggagggaaaatgtaggtctcctggataccccgggtatgggatagatagttttcagtattgat |
17752140 |
T |
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| Q |
101 |
atcgagtgtatatcgcattgatactagggcagagatttgattgtttagccataaagattatacctttatcctgttttctagtccaattctattgtaatgc |
200 |
Q |
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| T |
17752141 |
atcgagtgtatatcacattgatactagggcagagatttgattgtttagccataaagattatacctttatcctgttttctggtccaattttatcgtaatgc |
17752240 |
T |
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| Q |
201 |
aatgagtatatgatgtcaaatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
17752241 |
aatgagtatatgatgtcaaatg |
17752262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17761028 - 17761249
Alignment:
| Q |
1 |
attaggcatactctctgttttcatccgaaaattcccaaggagggaaaatgtaggtctcctggatacccagggtatgggatagatagttttctgtattgat |
100 |
Q |
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| T |
17761028 |
attaggcatactctctgttttcatccgaaaatccccaaggagggaaaatgtaggtctcctggataccccgggtatgggatagatagttttcagtattgat |
17761127 |
T |
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| Q |
101 |
atcgagtgtatatcgcattgatactagggcagagatttgattgtttagccataaagattatacctttatcctgttttctagtccaattctattgtaatgc |
200 |
Q |
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| T |
17761128 |
atcgagtgtatatcacattgatactagggcagagatttgattgtttagccataaagattatacctttatcctgttttctggtccaattttatcgtaatgc |
17761227 |
T |
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| Q |
201 |
aatgagtatatgatgtcaaatg |
222 |
Q |
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| T |
17761228 |
aatgagtatatgatgtcaaatg |
17761249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 17738031 - 17738163
Alignment:
| Q |
82 |
gatagttttctgtattgatatcgagtgtatatcgcattgatactagggcagagatttgattgtttagccataaaga------ttatacctttatcctgtt |
175 |
Q |
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|||||||||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||| |
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| T |
17738031 |
gatagttttctgtattgatatccgctctatatcacattgatactagggcagaga-ttgattgtttagcaataaagattatatttatacgtttatcctgtt |
17738129 |
T |
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| Q |
176 |
ttctagtccaattctattgtaatgcaatgagtat |
209 |
Q |
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| T |
17738130 |
ttctggtccaattctattgtaatgccatgagtat |
17738163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 15734552 - 15734711
Alignment:
| Q |
54 |
gtctcctggatacccagggtatgggatagatagttttctgtattgatat--cgagtgtatatcgcattgatactagggcagagatttgattgtttagcca |
151 |
Q |
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|||||||||||||| ||||||| |||||||||| | |||||||||||| | | |||| | ||||||||||||||||||||| ||||||||||| | |
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| T |
15734552 |
gtctcctggatacctggggtatgagatagatagtgtgctgtattgatatatccgctctataccacattgatactagggcagagatc-gattgtttagcaa |
15734650 |
T |
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| Q |
152 |
taaagattatacctttatcctgttttctagtccaattctattgtaatgcaatgagtatatgatgtcaaatg |
222 |
Q |
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|||| ||||| |||||||||| ||||||||||||||||||| |||||| |||||||||||||| |
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| T |
15734651 |
taaacattat--------cctgttttctggtccaattctattgtaatgtaatgag--tatgatgtcaaatg |
15734711 |
T |
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