View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_8 (Length: 486)
Name: NF5265_low_8
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 2 - 472
Target Start/End: Complemental strand, 36285466 - 36284987
Alignment:
| Q |
2 |
cagtctaagcatgcgagcacccgagaaacacacaaactaaaaccagcaaaaaacttcgagatgatacaatgctgcagactagcacagagaacataattat |
101 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36285466 |
cagtctaagcatgcgagcacccgagaaacacagaaactaaaaccaacaaaaaacttcgagatgatacaatgctgcagactagcacagagaacataattat |
36285367 |
T |
|
| Q |
102 |
gcctgcaattaagaatgcaacaatcatattggatcattacctaatagatactgaatcaatcatttaacttaacaatcgattaacgaaaccatttaatcga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36285366 |
gcctgcaattaagaatgcaacaatcatattggatcattacctaatagatactgaatcaatcatttaacttaacaatcgattaacgaaaccatttaatcga |
36285267 |
T |
|
| Q |
202 |
ctaacacactcaagggtattccctaattt-gaaaatcaccctaataaatcaaccttaatgatcaccagaataaattaatcttaacataccaattcattgt |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36285266 |
ctaacacactcaagggtattccctaatttggaaaatcaccctaataaatcaaccttaatgatcaccagaataaattaatcttaacataccaattcattat |
36285167 |
T |
|
| Q |
301 |
cttaagtttacacaattattcatcacatccaagccattcacaattagtcttaactctcaagattttttattccacaatttccctag--------gattat |
392 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36285166 |
cttaagtttacacaattattcatcacatccaagccattcacaattagtcttaactctcaagattttttattccacaatttccctaggattatatgattat |
36285067 |
T |
|
| Q |
393 |
atcttagcctacttcttgcacctctctaacatctaatcaattaactgtgttgcctaatcgactatcatcatataaaaatt |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36285066 |
atcttagcctacttcttgcacctctctaacatctaatcaattaactgtgttgcctaatcgactatcatcatataaaaatt |
36284987 |
T |
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