View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_9 (Length: 471)
Name: NF5265_low_9
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 31098651 - 31099103
Alignment:
| Q |
18 |
tcctctctttggcatgctcatttcagtcatttctcctaaaaaattctcactcgaatgttgtctctcaacaaattttgataataaaaactctgtaatgtgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098651 |
tcctctctttggcatgctcatttcagtcatttctcctaaaaaattctcactcgaatgttgtctctcaacaaattttgataataaaaactctgtaatgtgt |
31098750 |
T |
|
| Q |
118 |
catattnnnnnnnncatgaacttctattttccgtatgtccataaaaactagttgtcctcttgaactcatttt-tctgatgtttggagaccctctccaatt |
216 |
Q |
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| T |
31098751 |
catattaaaaaaaacatgaacttctgttttctgtatgtccataaaaactagttgtcctcttgaactcattttttctgatgtttggagaccctctccaatt |
31098850 |
T |
|
| Q |
217 |
aacactatcagtggatacaaatattatcttgtgttcgttgatcattttactagatataaatggatttatcccctaaaaagtaaaattgatgcttcttaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
31098851 |
aacactatcagtggatacaaatattatcttgtgttcgttgatcattttactagatataaatggatttatcccctaaaaagtaaaattgacgcttcttcca |
31098950 |
T |
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| Q |
317 |
tttcccccaacttttcacaaaagttagaacatattttgcgcag-aattaaatccatttacactgacagtggcattgaatatttcaaattaaaaccatact |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098951 |
tttcccccaacttttcacaaaagttagaacatattttgcgcagaaattaaatccatttacactgacagtggcattgaatatttcaaattaaaaccatact |
31099050 |
T |
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| Q |
416 |
taaaatcacatggaatatctcattacaccaattccccatatattcttggacat |
468 |
Q |
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| T |
31099051 |
taaaatcacatggaatatctcactacaccagttccccatatattcttgaacat |
31099103 |
T |
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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 1701880 - 1701955
Alignment:
| Q |
232 |
tacaaatattatcttgtgttcgttgatcattttactagatataaatggatttatcccctaaaaagtaaaattgatg |
307 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||| ||||| |
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| T |
1701880 |
tacaaatattatcttgtgtttgttgatcattttactcgatattcttggatttatccgttaaaaagtaaaactgatg |
1701955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 287
Target Start/End: Complemental strand, 26592636 - 26592503
Alignment:
| Q |
155 |
tccataaaaactagttgtcctcttgaactcatttt-tctgatgtttggagaccctctccaattaaca-ctatcagtggatacaaatattatcttgtgttc |
252 |
Q |
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||||||||||||| || |||||| ||||| ||||| |||||||||||| |||| || || || |||| | || | ||| || | ||| ||||||||||| |
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| T |
26592636 |
tccataaaaactaattctcctctagaacttattttctctgatgtttggggaccatcccctat-aacatccattaatggttatagatactatcttgtgttt |
26592538 |
T |
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| Q |
253 |
gttgatcattttactagatataaatggatttatcc |
287 |
Q |
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||||| || ||||||||||||| |||||||||||| |
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| T |
26592537 |
gttgaccactttactagatatacatggatttatcc |
26592503 |
T |
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