View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5265_low_94 (Length: 205)
Name: NF5265_low_94
Description: NF5265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5265_low_94 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 39309844 - 39309981
Alignment:
| Q |
50 |
gactgaataacaacaacactcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttggatttctacaaaatttgaacataatcaaacacaa |
149 |
Q |
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| T |
39309844 |
gactgaataacaacaacactcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttggatttctgcaaaatttgaacataatcaaacacaa |
39309943 |
T |
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| Q |
150 |
ggcacccatcaacctaaacatgacatgaaccccatcga |
187 |
Q |
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| T |
39309944 |
gacacccatcaacctaaacattacatgaaccccatcga |
39309981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 43831138 - 43831275
Alignment:
| Q |
50 |
gactgaataacaacaacactcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttggatttctacaaaatttgaacataatcaaacacaa |
149 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
43831138 |
gactgaataataacaacactcaaaagaaaaagtaaaactcagatctacaaatttggggattagttggatttctgcaaaatttgaacatagtcaaacacaa |
43831237 |
T |
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| Q |
150 |
ggcacccatcaacctaaacatgacatgaaccccatcga |
187 |
Q |
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| T |
43831238 |
gacacccatcaacctaaacatgacatgaaccccatcga |
43831275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 43308873 - 43309000
Alignment:
| Q |
57 |
taacaacaacactcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttggatttctacaaaatttgaacataatcaaacacaaggcaccc |
156 |
Q |
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|||||||| || |||||||||||||||||| ||||||||||||||||||| |||| ||| |||| | ||||||||| ||||||||||||||||| ||||| |
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| T |
43308873 |
taacaacaccaatcaaaagaaaaagtaaaaatcagatctacaaatttggggattaattgaatttttgcaaaatttgtacataatcaaacacaagacaccc |
43308972 |
T |
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| Q |
157 |
atcaacctaaacatgacatgaaccccat |
184 |
Q |
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| T |
43308973 |
atcaacctaaacatcacatgaaccccat |
43309000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 40170923 - 40170859
Alignment:
| Q |
123 |
acaaaatttgaacataatcaaacacaaggcacccatcaacctaaacatgacatgaaccccatcga |
187 |
Q |
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||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||| |
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| T |
40170923 |
acaaaatttgaacctaatcaaacacaagacacccatcaaccacaacaccacatgaaccccatcga |
40170859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 40171039 - 40170987
Alignment:
| Q |
50 |
gactgaataacaacaacactcaaaagaaaaagtaaaactcagatctacaaatt |
102 |
Q |
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|||| |||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
40171039 |
gactcaataacaacaacactcaaaagagaaagtaaaaatcagatctacaaatt |
40170987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 21795558 - 21795512
Alignment:
| Q |
138 |
aatcaaacacaaggcacccatcaacctaaacatgacatgaaccccat |
184 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||| ||||| |
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| T |
21795558 |
aatcaaacacaagacacccatcaacctaaacatcacatgaatcccat |
21795512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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